Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301E07f
         (447 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    29   0.43 
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    25   5.3  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    24   9.3  

>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 28.7 bits (61), Expect = 0.43
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 116 PLNRRHKLPKQQKRREPQK*HRHLEISP*FAPRLLLAPGLFIRQ 247
           P+N  +  P + KRR+P +  R+  ++P   PR +  P  F+++
Sbjct: 36  PINVINHSPSETKRRDPVEELRYKPLTPPQDPRKVAPPNSFLKK 79


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
 Frame = +1

Query: 277 NRFCICSAD-TTCAITEDDTEVHAYIHRCT 363
           N FC CS D T C    D    H  + R T
Sbjct: 66  NYFCTCSEDATVCVYPIDSPTEHTLLARTT 95


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +1

Query: 25  EIMRQSILLILAVCAFAAANVP 90
           +++R + LLI A+C  +  N+P
Sbjct: 371 QLLRDAFLLIRALCKLSIKNIP 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,577,263
Number of Sequences: 5004
Number of extensions: 26515
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)