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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS30080
         (676 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   187   1e-48
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...   110   2e-25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s...   109   3e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    72   7e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    66   4e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    58   2e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    53   4e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    46   4e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    38   0.002
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    31   0.20 
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    27   2.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.3  
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    26   4.3  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   4.3  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   7.6  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.6  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   10.0 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   10.0 
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S...    25   10.0 
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe...    25   10.0 

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  187 bits (455), Expect = 1e-48
 Identities = 92/134 (68%), Positives = 103/134 (76%)
 Frame = +1

Query: 256 EMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKC 435
           E+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+E  GIHE TYNSIMKC
Sbjct: 226 ELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKC 285

Query: 436 DVDIRKDLYANTVLSGGTTMYPGIATVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGGSI 615
           DVDIRKDLY N V+SGGTTMYPGIA   +++ Q       +++ +  PERKYSVWIGGSI
Sbjct: 286 DVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSI 345

Query: 616 PRFLSTSNRCGFSK 657
              LST  +   SK
Sbjct: 346 LASLSTFQQMWISK 359



 Score =  172 bits (419), Expect = 3e-44
 Identities = 85/99 (85%), Positives = 91/99 (91%)
 Frame = +2

Query: 2   SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
           SLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F
Sbjct: 141 SLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTF 200

Query: 182 TTTAEREIVRDIKEKLCYVALDFERKWPPLHPAAPSRSL 298
           +TTAEREIVRDIKEKLCYVALDFE++   L  AA S SL
Sbjct: 201 STTAEREIVRDIKEKLCYVALDFEQE---LQTAAQSSSL 236


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score =  110 bits (264), Expect = 2e-25
 Identities = 48/83 (57%), Positives = 67/83 (80%)
 Frame = +2

Query: 2   SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
           +LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL   L + G+  
Sbjct: 146 ALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHEL 205

Query: 182 TTTAEREIVRDIKEKLCYVALDF 250
            ++AE+EIVR+IKEK CYVA DF
Sbjct: 206 VSSAEKEIVREIKEKCCYVASDF 228



 Score =   99 bits (238), Expect = 3e-22
 Identities = 49/131 (37%), Positives = 74/131 (56%)
 Frame = +1

Query: 250 RAEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIM 429
           R+E+ +         +Y+LPD Q IT+G E F  PE LF P  +G EA G+H   + SI+
Sbjct: 229 RSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSIL 288

Query: 430 KCDVDIRKDLYANTVLSGGTTMYPGIATVCKRKSQLSPHRQ*RLRSLLLPERKYSVWIGG 609
             D+D+R  LY+N VLSGG+T+  G       + +    ++ +++    PER ++ W+GG
Sbjct: 289 LSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGG 348

Query: 610 SIPRFLSTSNR 642
           SI   LST  R
Sbjct: 349 SILASLSTFRR 359


>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
           subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score =  109 bits (263), Expect = 3e-25
 Identities = 48/84 (57%), Positives = 64/84 (76%)
 Frame = +2

Query: 2   SLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
           SLYA G ++G+V+DSGDGV+H VP+YE   L H + RLD+AGRD T YL+ +L  +GY+F
Sbjct: 141 SLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAF 200

Query: 182 TTTAEREIVRDIKEKLCYVALDFE 253
             TA+ E VR++KEKLCYV+ D E
Sbjct: 201 NRTADFETVREMKEKLCYVSYDLE 224



 Score = 91.1 bits (216), Expect = 1e-19
 Identities = 50/134 (37%), Positives = 80/134 (59%), Gaps = 11/134 (8%)
 Frame = +1

Query: 247 LRAEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSI 426
           L  +   +  ++ L ++Y LPDG+VI +G+ER+ CPE LFQP  +G E  G+ E  +++I
Sbjct: 223 LELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTI 282

Query: 427 MKCDVDIRKDLYANTVLSGGTTMYPGIATVCKRK-SQL--------SPHRQ*RLRSLL-- 573
              DVDIRK LY   VLSGG++MY G+ +  +++  QL         P R    +  +  
Sbjct: 283 QAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIED 342

Query: 574 LPERKYSVWIGGSI 615
            P R+++V+IGG++
Sbjct: 343 APRRRHAVFIGGAV 356


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 72.1 bits (169), Expect = 7e-14
 Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
 Frame = +1

Query: 268 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYN 420
           A +SS   K +E PDG     G ERFR  E LF PSF    +          G+HE  Y 
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330

Query: 421 SIMKCDVDIRKDLYANTVLSGGTTMYPGIATVCKRKSQ-LSPHRQ*RLRSL-LLPERKYS 594
           SI+ CD ++R  L  N V++GGT++ PG++   + + Q L+   +  + +         +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390

Query: 595 VWIGGSIPRFLSTSNRCGFSK 657
           VW GGSI   L        SK
Sbjct: 391 VWFGGSILASLDNFQHLWVSK 411


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 2/81 (2%)
 Frame = +2

Query: 26  TGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAER 199
           TG V+DSGDGV+H +P+ EGY +  +I  + LAGRD+T ++  +L +R    S   TAER
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER 239

Query: 200 EIVRDIKEKLCYVALDFERKW 262
                IKE+ CYV  D  +++
Sbjct: 240 -----IKEECCYVCPDIVKEF 255



 Score = 48.4 bits (110), Expect = 9e-07
 Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +1

Query: 322 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 498
           I +G ERF  PE  F P     +    + E   N +    +D+RK LY N VLSGG+T++
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339

Query: 499 PGIATVCKR 525
                  +R
Sbjct: 340 KNFGNRLQR 348


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 28/87 (32%), Positives = 50/87 (57%)
 Frame = +2

Query: 32  IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVR 211
           +V+DSG   +H +P+ +      A+ R+D+ G+ LT+YL ++++ R Y+     E  IV 
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNM--MEETYIVN 216

Query: 212 DIKEKLCYVALDFERKWPPLHPAAPSR 292
           +IKE +CYV+ +F+      H    S+
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSK 243



 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 24/63 (38%), Positives = 32/63 (50%)
 Frame = +1

Query: 316 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 495
           QV+ + NERF  PE LF PS + +   GI E    S+     +I+  L  N V  GG   
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCK 331

Query: 496 YPG 504
           +PG
Sbjct: 332 FPG 334


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 2/89 (2%)
 Frame = +1

Query: 397 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIATVCKRK-SQLSPHRQ*RLR-SL 570
           GI +   N I +CDVDIR  L  N ++ GGT++  G +   + + S+L P  + ++  S 
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGSRLKIHASG 385

Query: 571 LLPERKYSVWIGGSIPRFLSTSNRCGFSK 657
            + ER Y+ W+GGSI   L T ++   S+
Sbjct: 386 HVVERSYASWLGGSILSSLGTFHQLWISR 414



 Score = 30.7 bits (66), Expect = 0.20
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 8   YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGY 175
           +ASG+ T  ++D G   S    IY+G+ L         +G  + D L + L ++ +
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDILAQTLRDKNF 196


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 20/64 (31%), Positives = 38/64 (59%)
 Frame = +1

Query: 337 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIATV 516
           E+ R PE +F PS +G++  GI E   + + +  ++ ++ L +N +++GG    PG+ T 
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653

Query: 517 CKRK 528
            KR+
Sbjct: 654 IKRE 657



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +2

Query: 23  TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAERE 202
           ++GIVL+ G+  SH +P+  G  +     R+   G   + YL+K+   +  SF       
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSFPIKMLPS 224

Query: 203 IVRDIKEKLCYVALDF 250
               +    C+V+ D+
Sbjct: 225 QAELLMHDHCHVSSDY 240


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +2

Query: 5   LYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFT 184
           LYA G   G+V+D G   +   PI +G  +  A  +L L GR +T +L  +L E   +  
Sbjct: 188 LYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNLLRESLPTLK 247

Query: 185 TTAEREIVRDIKE 223
           ++ +     DI E
Sbjct: 248 SSGQYVSKEDITE 260


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 30.7 bits (66), Expect = 0.20
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = +2

Query: 8   YASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 181
           + +G +   V+D G   +    + EG  +P++ ++++  G D+T   MK+L    + +
Sbjct: 286 FGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRSHFPY 343


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 164 ERGYSFTTTAEREIVRDIKEKLCYVALDFERKWPPLHP 277
           E  Y    T ER + + +KE +C    D  R W   +P
Sbjct: 493 ENYYGNAFTTERTVPKTVKEAICDYNSDTSRTWDICNP 530


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 15   PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 107
            P VP  S   P+   P P PS++    P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +3

Query: 24  PPVSCWTPATVSPTPCPSTKDTHSP 98
           PPV+C TP    P  C   K  H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/51 (35%), Positives = 21/51 (41%)
 Frame = +1

Query: 10  RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHEDPH 162
           R RS HR+  G  RR  P+R HL R     RH  +     R  R      H
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREH 187


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 593 EYFLSGRSNDLNLHCRWGESCDFLLHTVAIPGY 495
           EY ++GRS+  NL   +GES + L  T   PG+
Sbjct: 590 EYTVNGRSHAFNLKSAYGES-EALSFTNYTPGF 621


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 271 QRWPFPLEVKSDVAQLLLDV 212
           Q+W FPL    DV   L+DV
Sbjct: 459 QKWMFPLSECQDVVDALIDV 478


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 263 PPLHPAAPSRSLTNFPTVRSSLSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS 427
           PP+   +PS SL   P    S +  + S   R ++  +S + K +    P  T S
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESYNNVQRSSTVRNNTTQKSVLKKPSRKMSPAYTSS 271


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
 Frame = +1

Query: 76  LRRIRTPPRHPASGLS----RSRPHRLPH 150
           +R++R  P   ASG++      +PHR PH
Sbjct: 70  MRKLRAKPVRTASGIAVVAVMCKPHRCPH 98


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = +3

Query: 9   TRPVVPPVSCWTPATVSPTPCPSTKDT 89
           T P     S  TPA V P P PST  T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859


>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
           Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 582

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
 Frame = +2

Query: 284 PSRSLTNFPTVRSSL--SETKDSVAQRLSSNPRSWVWKLAAST 406
           P+   T F  V   L  SET +SV  R S   +  +WKL   T
Sbjct: 216 PTNKETQFLAVGGMLKFSETTESVFMRTSGRNQIQLWKLENKT 258


>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +2

Query: 293 SLTNFPTVRSS---LSETKDSVAQRLSSNPRSW-VWKLAASTRPHI 418
           S T+ P VR S   L    D  A  L   P    +WK A ST PH+
Sbjct: 3   SYTHMPYVRPSAILLGIAFDHAASFLVYGPLMGDIWKRAMSTAPHV 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,070,105
Number of Sequences: 5004
Number of extensions: 66991
Number of successful extensions: 288
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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