BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fprWP01_F_E09 (386 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S... 112 2e-26 SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac... 112 2e-26 SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ... 27 1.4 SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 4.1 SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 25 5.5 SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 24 7.2 SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 24 9.6 SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 24 9.6 SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 9.6 SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc... 24 9.6 >SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|Schizosaccharomyces pombe|chr 3|||Manual Length = 91 Score = 112 bits (270), Expect = 2e-26 Identities = 51/86 (59%), Positives = 60/86 (69%) Frame = -3 Query: 363 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 184 MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60 Query: 183 XXRMRHLKIVRRRFRNGFKERETNAA 106 RM +LK V R F+NGF+ + AA Sbjct: 61 TGRMSYLKKVHRSFKNGFRSGKPAAA 86 >SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosaccharomyces pombe|chr 1|||Manual Length = 89 Score = 112 bits (269), Expect = 2e-26 Identities = 52/87 (59%), Positives = 62/87 (71%), Gaps = 1/87 (1%) Frame = -3 Query: 363 MTKGTSSFGKRRNKTHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXX 184 MTKGT SFG R NK+HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W KA Sbjct: 1 MTKGTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTG 60 Query: 183 XXRMRHLKIVRRRFRNGFKE-RETNAA 106 RM +LK V R F+NGF+ + T+AA Sbjct: 61 TGRMSYLKKVHRSFKNGFRAGKPTSAA 87 >SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 345 Score = 26.6 bits (56), Expect = 1.4 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +2 Query: 155 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 268 T+F + +PV+ + FT+ W N A +P A F Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234 >SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 Brl1|Schizosaccharomyces pombe|chr 3|||Manual Length = 692 Score = 25.0 bits (52), Expect = 4.1 Identities = 10/28 (35%), Positives = 11/28 (39%) Frame = -3 Query: 327 NKTHTLCRRCGRSSYHIQKSKCAQCGYP 244 N H C C Y + S C QC P Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681 >SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizosaccharomyces pombe|chr 2|||Manual Length = 220 Score = 24.6 bits (51), Expect = 5.5 Identities = 10/23 (43%), Positives = 14/23 (60%) Frame = +1 Query: 82 HDEATAFLGGVGFPFFKTITEAP 150 ++ + AFL G GFP F+T P Sbjct: 150 YNASNAFLWGTGFPKFRTNAIVP 172 >SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1096 Score = 24.2 bits (50), Expect = 7.2 Identities = 9/34 (26%), Positives = 19/34 (55%) Frame = +3 Query: 264 ILIFECDMTIYHIFCITYGSYFGAYRSLRYPSSS 365 +LI+ CD +++ CI + S + + S++ S Sbjct: 211 VLIWLCDSFVFYSCCIVFISSYSIFLSVKESKES 244 >SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein Pvg2|Schizosaccharomyces pombe|chr 1|||Manual Length = 389 Score = 23.8 bits (49), Expect = 9.6 Identities = 12/36 (33%), Positives = 16/36 (44%) Frame = +2 Query: 257 WAHFDF*M*YDDLPHLLHNVWVLFRRLPKLEVPFVI 364 W+H D D H LHN W R K + F++ Sbjct: 158 WSHDDLNELVDKSYHNLHNAWSQLSREAKDQWGFLL 193 >SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 426 Score = 23.8 bits (49), Expect = 9.6 Identities = 7/25 (28%), Positives = 14/25 (56%) Frame = -2 Query: 259 PMWISCSKITILPLVSEG*AQEDYW 185 P W+SC+++ +L + +D W Sbjct: 272 PTWLSCARLPLLKAFKDVIGLKDVW 296 >SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2111 Score = 23.8 bits (49), Expect = 9.6 Identities = 10/31 (32%), Positives = 13/31 (41%) Frame = -3 Query: 336 KRRNKTHTLCRRCGRSSYHIQKSKCAQCGYP 244 KR N L R +Q ++C CG P Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662 >SPAC24H6.05 |cdc25|sal2|serine/threonine protein phosphatase Cdc25|Schizosaccharomyces pombe|chr 1|||Manual Length = 596 Score = 23.8 bits (49), Expect = 9.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -3 Query: 357 KGTSSFGKRRNKTHTLCRRCGRSS 286 KGTS R+ T+ L R C +SS Sbjct: 214 KGTSGGQATRHLTYALSRTCSQSS 237 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,357,456 Number of Sequences: 5004 Number of extensions: 23802 Number of successful extensions: 54 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 54 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 54 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 128344734 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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