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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10b05f
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p...    31   0.19 
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   1.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   1.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   1.8  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   2.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   3.1  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   4.0  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   4.0  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   5.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.3  
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.3  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    26   5.3  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    25   7.1  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.1  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   7.1  
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ...    25   9.3  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    25   9.3  
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S...    25   9.3  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   9.3  

>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 301

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 135 THLDMIGRNETP----SKKARFWQSFVRSLKGSEDIRAEERYRPTRR 263
           T  +  GR+ +P    S+K R  +  +RS   S   R E+RYRPTRR
Sbjct: 201 TERNRYGRSPSPHSRFSEKPRGERYDIRSYSRSHKERYEDRYRPTRR 247


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/70 (27%), Positives = 28/70 (40%)
 Frame = +1

Query: 292 TLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQD 471
           TL  S  T T+S P     Y    +  S+   T    + +  T     S  T  S + QD
Sbjct: 236 TLESSSLTNTVS-PTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQD 294

Query: 472 ACDVELIPST 501
           +  ++  PST
Sbjct: 295 STTIDSTPST 304



 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/90 (20%), Positives = 33/90 (36%)
 Frame = +1

Query: 193 SPSCVL*KVRKTSEPRKGTGQHAAAFFPNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCL 372
           +PS  L      S  +           P+S +   T S FTT +++      +P T+   
Sbjct: 484 TPSSYLSNTTLHSSVQSSQSSQFTVSVPSSTQSYSTSSNFTTPITISTSLSSFPTTIVSS 543

Query: 373 SIARSTATPRALSMPTTTLALSIITGQSTT 462
           S   S+ +    +    + +LS     + T
Sbjct: 544 SFQYSSLSSNVTTTNAQSSSLSSSNSSALT 573


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 25/99 (25%), Positives = 40/99 (40%)
 Frame = +1

Query: 274 PNSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQ 453
           P S    LT +  TT+ S+P      P T T L+    T    + S+P T+  ++     
Sbjct: 415 PTSSSTPLTTTNCTTSTSVPYTST--PVTSTPLATTNCTT---STSVPYTSTPVTSTPLT 469

Query: 454 STTCQDACDVELIPSTPTRHGRTISTGWLPSTGCTHLAT 570
           +T C  +  +    STP       +T    ST   + +T
Sbjct: 470 TTNCTTSTSIP-YTSTPVTSTPLTTTNCTTSTSVPYTST 507



 Score = 25.8 bits (54), Expect = 5.3
 Identities = 24/88 (27%), Positives = 33/88 (37%)
 Frame = +1

Query: 289 PTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQ 468
           PT T S  T +  LP        + +      ST        PT+T + S     ++T  
Sbjct: 265 PTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSS 324

Query: 469 DACDVELIPSTPTRHGRTISTGWLPSTG 552
                  +PST T    T ST  +P TG
Sbjct: 325 TGTSSSPLPSTST--SCTTSTS-IPPTG 349


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = +1

Query: 349  YPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTIS 528
            Y  + +  S + S  +    S+ +++L+ SI  G S +         +PST + H  +IS
Sbjct: 3634 YDLSTSAFSSSSSEPSTLDYSVSSSSLSSSIGVGSSFSSNSKVTSNKVPSTVSPHSSSIS 3693

Query: 529  TGWLPST 549
                P+T
Sbjct: 3694 DTKSPAT 3700


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 461 RAKTRATWS*SLRRPQGMAGPSRQA-GCHR 547
           R+ ++ +WS  LRRP     P RQ+ G HR
Sbjct: 244 RSPSKGSWSSILRRPSLTYSPKRQSTGLHR 273


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +3

Query: 219 SEDIRAEERYRPTRRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREI---Y 389
           S D+   E     RR+  P+    +  SK+ Y  P    E I     +   V +     Y
Sbjct: 573 SSDVHKNENAGTARRA--PQS-GAFVASKAKYSSPYDLPEEIVQVAQQKRSVSQNYNRQY 629

Query: 390 GYSPRPIYAHNYPRSL 437
            + PRP    N PRSL
Sbjct: 630 SFQPRPATPSNPPRSL 645


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 486 VDPFDAHKAWQDHLDRLAAIDRLYPSRYGLYLKD 587
           +D  D  +    H D+LAA    YPS +G++  D
Sbjct: 691 LDMQDLKEKASKHADKLAAFMVTYPSTFGIFEPD 724


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 582 KDRAYPITDFTAPLIDPL 635
           K RAYP  DF  P++D L
Sbjct: 379 KYRAYPTYDFACPIVDSL 396


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 20/68 (29%), Positives = 24/68 (35%)
 Frame = +3

Query: 258 RRSVFPELLSTYPYSKSIYDDPIAAAERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSL 437
           RR V+      YP  K  Y    +A +    PG       R     SP    A    R  
Sbjct: 665 RRMVWAWRGEYYPAKKGEYHMIYSALQSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIA 724

Query: 438 DYYRPIYH 461
           DY R +YH
Sbjct: 725 DYSRKVYH 732


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +1

Query: 277 NSCRPTLTPSRFTTTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQS 456
           +S   TLT S  +T+ S+P       +T + LS + S++T  + S  ++ ++ S  +  S
Sbjct: 224 SSSSSTLTSSSLSTS-SIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSS 282

Query: 457 --TTCQDACDVELIPSTPTRHGRTIST 531
             +T           S+PT    TIS+
Sbjct: 283 PTSTSSTISSSSSSSSSPTSTSSTISS 309


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
 Frame = +1

Query: 316 TTLSLPLRGLRYPATVTCLS---IARSTATPRALSMPTTTLALSIITGQSTTCQDACDVE 486
           T+ + P  G +  ++ + LS   I+ S++TP   S+PT++  LS     ++T      V 
Sbjct: 68  TSENYPYTGSKSLSSSSILSNSTISTSSSTPITASVPTSSSILS-----NSTIPTTSPVP 122

Query: 487 LIPSTPTRHGRTISTGWLPSTGCTHLAT 570
              STPT     +S   +PS+     +T
Sbjct: 123 TTSSTPT-SSSILSNSTIPSSSSISAST 149


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +1

Query: 316 TTLSLPLRGLRYPATVTCLSIARSTATPRALSMPTTTLALSIITGQSTTCQDACDVELIP 495
           TT S PL     P+ V C  IA +     ALS+     A     G   TC+D      +P
Sbjct: 82  TTYSYPLISGGAPSAVWCWLIAGAGCMCIALSVAELVSAYPTSGGLYFTCKDLVPARSMP 141


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +2

Query: 521 PSRQAGCH-RPAVPISLRTLPKGPGLPHHRLY-RTPHRPP 634
           P  Q+ C   P     +R+ P  P   HH  + R PH PP
Sbjct: 141 PQVQSYCRPEPLSSNHVRSCPPFPPTQHHHPHTRPPHHPP 180


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = +3

Query: 336 ERITVPGYRYLPVHREIYGYSPRPIYAHNYPRSLDYYRPIY 458
           ++ +V  Y   P H      S RPI  +N     DY   +Y
Sbjct: 875 DKDSVDAYNRFPFHSYFGDKSKRPIETYNKDNFFDYATKLY 915


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +1

Query: 220 RKTSEPRKGTGQHAAA--FFPNSCRPTLTPSRFT 315
           ++T+  + GT  +A A  F PN   P  TP +FT
Sbjct: 415 KETTGTKLGTKLNAKAISFKPNVAAPVFTPGKFT 448


>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1012

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 447 RPIYHVPRRVRRGVDPFDAHKAWQDHLDRLAAIDRLYPSRYGL 575
           +P +  P+R    +  FD H   ++H D + A   LY   YGL
Sbjct: 699 QPFWSGPKRAPTPLS-FDIHN--REHFDFIVAAASLYAFNYGL 738


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +1

Query: 313 TTTLSLPLRGLRYPATVTCLSIA---RSTATPRALSMPTTTLALSIITGQS 456
           T + S  L G+R    +T   IA    S   P  +S PT+ LAL  ++ QS
Sbjct: 220 TLSKSFGLAGIRIGFCLTSKPIATIMNSLKAPYNISEPTSRLALDALSPQS 270


>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
           Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 95  TQYEHDIDRQNVQNTFRHDWQKRDAVEESQILAVLRAFSKRF 220
           TQ+E  ID+ +V  +F      +  V+E Q+  V     +RF
Sbjct: 258 TQFELSIDKADVSFSFARFLNGKGIVKELQLKGVRGVVDRRF 299


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = +2

Query: 152 WQKRDAVEESQILAVLRAFSKRFGRHQSRGKVQANTPQRFSRTPVDLPLLQVDLRRPYRC 331
           W+  D +   ++ AV+ A ++        G++  ++P R +  P+ + L  V   +    
Sbjct: 719 WETPD-IRVMRVKAVMPANNRAAVLRIYAGRLGVSSPVRTAPHPMAMSLPFVHHGKNKAL 777

Query: 332 R*EDYGTRLPLPACPSRDL 388
              ++ TR P+P CPS DL
Sbjct: 778 ---EFVTRHPVPHCPSVDL 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,762
Number of Sequences: 5004
Number of extensions: 58338
Number of successful extensions: 191
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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