BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P01_F_G19 (652 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.1 SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|... 26 5.4 SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 9.5 >SPAC9E9.02 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual Length = 98 Score = 26.2 bits (55), Expect = 4.1 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -2 Query: 315 NLSFRVILVACRPCNFSITIFASPR*LQTKIL 220 N + +I +A PCNFS ++F + ++ +L Sbjct: 39 NRLYEIISIALNPCNFSKSLFWLRKKIKNSVL 70 >SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 25.8 bits (54), Expect = 5.4 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 4/60 (6%) Frame = +2 Query: 191 KLAXPKIFVYRILVCSYRGEANMVIEKLHGLQATSITLNDRFTL----LSTAGTDRAAMR 358 +L ++ Y I+V S N+ IEKL + +S L + +TL L+ + T+ A R Sbjct: 86 ELVQHRVRYYEIIVKSILKSLNIPIEKLRFVIGSSYQLKEDYTLDNFRLAASTTEHTARR 145 >SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharomyces pombe|chr 2|||Manual Length = 830 Score = 25.0 bits (52), Expect = 9.5 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%) Frame = +2 Query: 242 RGEANMVIEKLHGLQATSITLNDRFTLLSTAGTD--RAAMRMKKRPTVHQYLTQTLNIXN 415 +GE N+V ++L L + + + L + AG D A+++ KR V++ + + Sbjct: 451 QGEENLVFKRLRMLLSVIMLRRTKTLLEANAGKDGTGGALKLSKR-LVYKVICK-FEESE 508 Query: 416 RFLIDQIARKLEYQMKRATLRQRLG 490 R +AR +E M +LG Sbjct: 509 RDFYSNLARNMERTMSNFVNSGKLG 533 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,404,088 Number of Sequences: 5004 Number of extensions: 45802 Number of successful extensions: 78 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 78 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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