BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fe100P01_F_G07 (653 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharom... 184 1e-47 SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi... 61 1e-10 SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 39 5e-04 SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 36 0.005 SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 36 0.005 SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 35 0.012 SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 34 0.021 SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 31 0.11 SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 31 0.15 SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 31 0.19 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 30 0.34 SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 30 0.34 SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.44 SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.59 SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 29 0.77 SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 28 1.0 SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 28 1.0 SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 28 1.0 SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 27 1.8 SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr... 27 2.4 SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 3.1 SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 27 3.1 SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 4.1 SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 26 4.1 SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 25 7.2 SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 25 9.5 >SPAC23H4.18c |rbx1|pip1, pip1|RING-box protein 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 107 Score = 184 bits (448), Expect = 1e-47 Identities = 78/113 (69%), Positives = 86/113 (76%) Frame = +3 Query: 99 MASVMDVDEEXVEMASSXXGKGXKKRFEVKKWNAVXLWAWDIVVDNCAICRNHIMDLCIE 278 M M +D++ VE+ RFE+KKWNAV LW WDIVVDNCAICRNHIMDLCIE Sbjct: 1 MEDEMQIDKKEVEIEQKPP------RFEIKKWNAVALWQWDIVVDNCAICRNHIMDLCIE 54 Query: 279 CQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLHNXXWEFQKYGH 437 CQAN SA ++ECTVAWG CNHAFHFHCISRWL TR VCPL N WEFQ+YGH Sbjct: 55 CQANTDSAAAQECTVAWGTCNHAFHFHCISRWLNTRNVCPLDNREWEFQRYGH 107 >SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schizosaccharomyces pombe|chr 1|||Manual Length = 94 Score = 61.3 bits (142), Expect = 1e-10 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 1/71 (1%) Frame = +3 Query: 174 RFEVKKWNAVXLWAWDIVVDN-CAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF 350 + ++ +++A+ W WD D+ C ICR C +C ++ + C + WG C H F Sbjct: 2 KVKILRYHAIANWTWDTPKDDVCGICRVPFDGCCPQC-----TSPGDNCPIVWGKCKHIF 56 Query: 351 HFHCISRWLKT 383 H HCI WL T Sbjct: 57 HAHCIQNWLAT 67 >SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 677 Score = 39.1 bits (87), Expect = 5e-04 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +3 Query: 336 CNHAFHFHCISRWLKTRQVCPL 401 C H HFHC+ WL+ +Q CP+ Sbjct: 328 CGHILHFHCLRNWLERQQTCPI 349 >SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 676 Score = 35.9 bits (79), Expect = 0.005 Identities = 9/22 (40%), Positives = 17/22 (77%) Frame = +3 Query: 336 CNHAFHFHCISRWLKTRQVCPL 401 C+H +H C+ +W++TR +CP+ Sbjct: 647 CHHLYHRQCLLQWMETRSICPV 668 >SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 571 Score = 35.9 bits (79), Expect = 0.005 Identities = 13/35 (37%), Positives = 18/35 (51%) Frame = +3 Query: 297 SATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 401 S+T + +A C H FH HC+ W + CPL Sbjct: 43 SSTLDGLRIAKIPCGHYFHNHCLESWCRVANTCPL 77 >SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 583 Score = 34.7 bits (76), Expect = 0.012 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%) Frame = +3 Query: 270 CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ-VCPL 401 C+ C +N ++EC CNH FH CI +WL + Q CPL Sbjct: 525 CLVCLSN--FELNDECR-RLKQCNHFFHRECIDQWLTSSQNSCPL 566 >SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 309 Score = 33.9 bits (74), Expect = 0.021 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +3 Query: 264 DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV-CPLHNXXWEFQKY 431 D CI C A+ A + + C H FH CI W+ T + CPL N ++ KY Sbjct: 203 DFCIICYADYAF----DDILRVLPCEHVFHTQCIDTWMTTMKASCPLCNE--DYYKY 253 >SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 372 Score = 31.5 bits (68), Expect = 0.11 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Frame = +3 Query: 273 IECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLHN 407 +EC S T + VA C H FH CI++W+ R CP N Sbjct: 319 VECVICLESFTKGDKVVALP-CKHEFHRPCIAKWIVDYRHACPTCN 363 >SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pombe|chr 2|||Manual Length = 741 Score = 31.1 bits (67), Expect = 0.15 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 1/54 (1%) Frame = +3 Query: 243 ICRNHIMDL-CIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 401 + + +MDL C C + ++ T C H F +C+ +WL+ CPL Sbjct: 97 LSNDQLMDLTCPICYDDMNENDEKQATKM--PCGHIFGKNCLQKWLENHCTCPL 148 >SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1610 Score = 30.7 bits (66), Expect = 0.19 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Frame = +3 Query: 330 GVCNHAFHFHCISRWLKTRQV--CPLHNXXWEF 422 G C H FH C+ +W K+ CPL + F Sbjct: 1577 GTCRHKFHASCLYKWFKSSNSSRCPLCRSSFTF 1609 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 29.9 bits (64), Expect = 0.34 Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%) Frame = +3 Query: 303 TSEECTVAW--GVCNHAFHFHCISRWLK 380 T T W G C H FH CI +W K Sbjct: 203 TINPSTSIWSCGTCYHVFHLSCIRKWCK 230 >SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 821 Score = 29.9 bits (64), Expect = 0.34 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%) Frame = +3 Query: 336 CNHAFHFHCISRWLKT-RQVCPL 401 C H FH CI +WL T CPL Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPL 807 >SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 513 Score = 29.5 bits (63), Expect = 0.44 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = +3 Query: 336 CNHAFHFHCISRWLKTRQVCPL 401 C H FH +CI WL+ C + Sbjct: 414 CKHYFHENCIKPWLRVNGTCAI 435 >SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 468 Score = 29.1 bits (62), Expect = 0.59 Identities = 8/21 (38%), Positives = 12/21 (57%) Frame = +3 Query: 336 CNHAFHFHCISRWLKTRQVCP 398 C H + + C+ WLK + CP Sbjct: 100 CGHTYCYECLLNWLKESKSCP 120 >SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 547 Score = 28.7 bits (61), Expect = 0.77 Identities = 11/35 (31%), Positives = 17/35 (48%) Frame = +3 Query: 270 CIECQANQASATSEECTVAWGVCNHAFHFHCISRW 374 C+ C S+ + T+ VC H FH C+ +W Sbjct: 208 CVVCLERMDSSITGLITI---VCQHTFHCPCLQKW 239 >SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 306 Score = 28.3 bits (60), Expect = 1.0 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = +3 Query: 336 CNHAFHFHCISRWLKTRQVCPL 401 C H F + CI+ W + CPL Sbjct: 271 CGHIFCWSCINGWTSKKSECPL 292 >SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 668 Score = 28.3 bits (60), Expect = 1.0 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +2 Query: 425 KVWSLNVIXKSCILHRSLTSSEHXELTCQYL 517 +VW L + + CI R S E+ E TC L Sbjct: 25 EVWPLVTVPRQCICLRWCISKEYHEFTCSSL 55 >SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 1|||Manual Length = 905 Score = 28.3 bits (60), Expect = 1.0 Identities = 10/28 (35%), Positives = 12/28 (42%) Frame = +3 Query: 336 CNHAFHFHCISRWLKTRQVCPLHNXXWE 419 C H H S W T +CP+ N E Sbjct: 874 CGHGAHASHASEWFSTHTICPVPNCDCE 901 >SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosaccharomyces pombe|chr 3|||Manual Length = 680 Score = 27.5 bits (58), Expect = 1.8 Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%) Frame = +3 Query: 333 VCNHAFHFHCISRWLKTRQ-VCPL 401 +C H F + CI + ++TRQ CP+ Sbjct: 642 LCGHGFCYQCIQKRIETRQRRCPI 665 >SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr 1|||Manual Length = 454 Score = 27.1 bits (57), Expect = 2.4 Identities = 9/51 (17%), Positives = 23/51 (45%) Frame = +3 Query: 42 TQPNNSWLFFNKTGXFNLKMASVMDVDEEXVEMASSXXGKGXKKRFEVKKW 194 T P+ S FN+ F + + + + M ++ G ++++++ W Sbjct: 320 THPSRSSEMFNEIVNFQKEFVETLKIPARILNMPTAELGSSASQKYDIEAW 370 >SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pombe|chr 1|||Manual Length = 1375 Score = 26.6 bits (56), Expect = 3.1 Identities = 8/22 (36%), Positives = 11/22 (50%) Frame = +3 Query: 336 CNHAFHFHCISRWLKTRQVCPL 401 C H + C+ WLK CP+ Sbjct: 1107 CGHLYCSFCLEAWLKHSSSCPM 1128 >SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 556 Score = 26.6 bits (56), Expect = 3.1 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%) Frame = +3 Query: 336 CNHAFHFHCISRW-LKTRQVCPL 401 C+H FH CI + LK +CPL Sbjct: 517 CHHIFHPACIDPYLLKNSDLCPL 539 >SPBC16G5.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 268 Score = 26.2 bits (55), Expect = 4.1 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%) Frame = +3 Query: 336 CNH-AFHFHCISRWLKTRQVCPL 401 C H F + CI RW+ CP+ Sbjct: 37 CGHDQFDYSCICRWMDQSLTCPI 59 >SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pombe|chr 2|||Manual Length = 736 Score = 26.2 bits (55), Expect = 4.1 Identities = 15/61 (24%), Positives = 32/61 (52%) Frame = +1 Query: 283 KQIKPQPLVKNAQLLGVFVIMHSISTVFPVG*RLDKFVHYTIXNGSSKSMVIKCHLXELH 462 ++I P P+++ + + +V H I + ++D + NG+ KS ++K + +LH Sbjct: 511 EKISP-PILQMSDVNFEYVPGHPILKHVDIDVQMDSRIGVVGPNGAGKSTMLKLLIEQLH 569 Query: 463 P 465 P Sbjct: 570 P 570 >SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit Bgs2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1894 Score = 25.4 bits (53), Expect = 7.2 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +1 Query: 217 GILLSTTVLFAEIT*WICVSNAKQIKPQPLVKNAQLLGVFVIMHSISTVFPVG 375 G + + +L A I WI V K +PL+K +L +F I++ TVF G Sbjct: 534 GAVATLLMLLATIFEWIHVPR-KFPGSRPLLKRFLILILFFILNVAPTVFVFG 585 >SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizosaccharomyces pombe|chr 1|||Manual Length = 506 Score = 25.0 bits (52), Expect = 9.5 Identities = 8/23 (34%), Positives = 13/23 (56%) Frame = +2 Query: 416 GVPKVWSLNVIXKSCILHRSLTS 484 G ++W+ N + C+LH S S Sbjct: 449 GTVRIWNFNTGEQHCVLHNSRNS 471 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,568,561 Number of Sequences: 5004 Number of extensions: 51097 Number of successful extensions: 123 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 117 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 123 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 295793106 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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