Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20075
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.8  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    27   3.8  
SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   6.7  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    25   8.8  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 323  PAFVSPTQSPYSVQPRRIQPP--ALTLAP 243
            P    P QSP  VQP   QPP  AL + P
Sbjct: 1031 PMAADPFQSPLYVQPTGFQPPPSALPIQP 1059


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -1

Query: 684 APIRRTPSTTGFSKELIFMLDGHVGAFLVQRNNIVQFHVVTHAD 553
           A + + PS +   KELI     ++GAFL++  N     V+T+ D
Sbjct: 179 AIVTKNPSVSEAIKELIKKRQPYIGAFLLKDEN-TDTDVITNID 221


>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 434 CHDIQYPAIAKICKDNTAHFENYIHTFSNR 523
           C+D     +  ICK  T   E ++ TF N+
Sbjct: 631 CYDPDTETVQSICKLGTGFSEEHLETFYNQ 660


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 653 PVVLGVLRIGAVIFSTGPRMQRYAFTASTACGP 751
           P  LG L + + I+STG     Y    +  CGP
Sbjct: 184 PPKLGYLPVPSFIYSTGELPLSYPTLLAVLCGP 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,322,121
Number of Sequences: 5004
Number of extensions: 72895
Number of successful extensions: 236
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)