Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0100
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    29   0.52 
SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20 |Schizosacc...    28   1.6  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   2.8  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   3.7  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   3.7  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   4.8  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    26   6.4  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   8.5  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    25   8.5  

>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 29.5 bits (63), Expect = 0.52
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -3

Query: 250 LIPNHVFHLG-RCRLSRYFT--LGYLFTPQIVTVDELSYIVAR 131
           ++ N   H+  +C L  +FT     L+ P I+ +DE+ +++AR
Sbjct: 252 ILENEDHHINFQCELESHFTQSANELYNPVIIVLDEMDHLIAR 294


>SPCC4B3.14 |cwf20||complexed with Cdc5 protein Cwf20
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 290

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/67 (26%), Positives = 29/67 (43%)
 Frame = +1

Query: 286 DNDFHNPDRSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPLKSSDF 465
           D  F+  D  I++ERF + + L          ++ P S+  S  + +ENY       SD 
Sbjct: 63  DKTFNESD-VISNERFKSNDLLELLPAPKNQAELAPKSSKRSDLDLNENYLLPNNSVSDL 121

Query: 466 QKTGKKQ 486
             TG  +
Sbjct: 122 TSTGSSE 128


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 355 STSSRPLKTFRMLCSC 308
           STS+  LKTFR +C C
Sbjct: 612 STSAEELKTFRAMCKC 627


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +3

Query: 6   FY*RAVVGCCETTLQIQCSRSLYLLSHSRAFNLLIVGSY--SHYRATIYDSSSTVTICGV 179
           F+ R +    E TL++  +  L  L+    F  ++  S   +   +T   SS   ++CG 
Sbjct: 388 FFKRCLEEDIEPTLRLDHASGLSWLTRRSVFTAILESSLIINPLHSTSLLSSQPCSLCGF 447

Query: 180 NK*PRVKYLDSRQRP 224
           N+   ++  + R RP
Sbjct: 448 NRTQPLRQFEFRSRP 462


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 331 FSTGENLYWYMTSNKNHKINPDSALESWFNEHEN 432
           ++TG N +WY+    N    P +AL SW  EH N
Sbjct: 327 WTTG-NYHWYLKKEINI---PQNALISWHPEHAN 356


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 606 NYLGNIPYKSGEPSNRLVCGAGDCSKP 686
           N+ G I  K+ EPS R++C    C KP
Sbjct: 760 NHTGEITRKATEPSIRIICNF--CRKP 784


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 397 SALESWFNEHENYKFAPLKSSDFQKTGKKQIAHYT 501
           ++LE  FN H NY +  L    F +  K+ I   T
Sbjct: 64  NSLEKHFNRHFNYPYTFLNDEPFDEKFKETILKLT 98


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 310 RSIASERFSTGENLYWYMTSNKNHKINPDSALESWFNEHENYKFAPLKSSDFQK 471
           RS+AS         Y +      ++ N  SA+++W  EH     +    SDFQ+
Sbjct: 4   RSVASLGVLLAIVFYIFTYGFSTYRKNDTSAVKTWLEEHSIPYGSRSSPSDFQQ 57


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 7/29 (24%), Positives = 17/29 (58%)
 Frame = -1

Query: 633 ICMGYCLDSSQQVHSCTQRRMISSVQSAR 547
           +C+  C D + Q+++C   + + S+ S +
Sbjct: 40  LCLASCTDDTLQLYNCISGKFVKSLASKK 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,753
Number of Sequences: 5004
Number of extensions: 70213
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)