Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0081
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    93   3e-20
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    28   1.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.4  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 41/73 (56%), Positives = 50/73 (68%)
 Frame = +1

Query: 37  IPNGHFHKDWQRFVKTWFNQPARRYRRKQNRIXXXXXXXXXXXXXXLRPIVRCPTVRYHT 216
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 217 KVRAGRGFTLREI 255
           KVRAGRGFTL E+
Sbjct: 68  KVRAGRGFTLEEL 80



 Score = 64.9 bits (151), Expect = 1e-11
 Identities = 39/92 (42%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
 Frame = +3

Query: 255 RAAGLNPVFARTIGIAVDPRRRNKSVESLQINVQRIKEYRARLILFP-KGKKVLKGEANE 431
           +AAG++   A TIGI VD RRRN+S ESLQ NV+RIK Y A LI+FP K  +  KG+A +
Sbjct: 81  KAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATD 140

Query: 432 EERKLATQLRGPLMPVQQPAPKSVASLSLKMK 527
                 T +   ++P+ Q A +    ++ + K
Sbjct: 141 VSGAEQTDV-AAVLPITQEAVEEAKPITEEAK 171



 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/41 (43%), Positives = 23/41 (56%)
 Frame = +2

Query: 506 KPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPD 628
           KPITE+ KNF A+  L   R+ A+  G RA   K  AE  +
Sbjct: 164 KPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRAEEAE 204


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1283

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -3

Query: 249  TKSESSTGAYFSM----VPNSWASHYRT*RPSCRTWSYGLSFLY 130
            T   +STG+Y  M    +   W S   T    C TWSY  S+ Y
Sbjct: 1215 TVQGTSTGSYICMPHFQIQYDWCSAGVTDMSECNTWSYQKSYDY 1258


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 530 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 622
           N ++ ++LR A S A++VG   +R++   EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,667
Number of Sequences: 5004
Number of extensions: 56146
Number of successful extensions: 149
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)