Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0074
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    29   0.79 
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    28   1.8  

>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -1

Query: 527 HPYLTLRNPVTPLHGVHSIRHVLLLRVNESEIQPSLTS 414
           +PY   R P+ P H V S R    L+VN +   PS  S
Sbjct: 222 YPYELQRKPLIPAHPVPSFRPTSALKVNMNSNVPSSDS 259


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 468 ADAVYPVEWGYRISEGEIRVVSFESEMDRIL 560
           AD    V+W Y ++EGEI + S       I+
Sbjct: 579 ADLTMDVQWSYNLAEGEIVIASIRRNPHEIV 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,208,226
Number of Sequences: 5004
Number of extensions: 64041
Number of successful extensions: 159
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)