Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0048
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub...    25   5.6  
SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase |Schiz...    25   7.4  

>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
           subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 374 LSFFC*TSTDSNKGSAYV 321
           LSF+   S DSNKG+ Y+
Sbjct: 57  LSFYAKPSNDSNKGTIYI 74


>SPBPB2B2.10c |||galactose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +3

Query: 303 SHRRYGHIRGSFIRVSRRSAEKR-QIP*EEGRSEGTVRERSEERLLPGQV 449
           SHRRY  +  S++  S   A++  Q   EE + + TV+      L PG +
Sbjct: 12  SHRRYNPLTDSYVLCSPHRAKRPWQGAKEEIKKDDTVKYDPTCYLCPGNI 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,225
Number of Sequences: 5004
Number of extensions: 25701
Number of successful extensions: 58
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)