Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0040
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch...    27   2.0  
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo...    27   2.0  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.5  

>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 143 RLIRDVIDVRSAPNYNCV*NLS*QYITCNVVST 241
           RLI    +  +AP Y  V   S +++TC +VS+
Sbjct: 35  RLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSS 67


>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
           L5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 143 RLIRDVIDVRSAPNYNCV*NLS*QYITCNVVST 241
           RLI    +  +AP Y  V   S +++TC +VS+
Sbjct: 35  RLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSS 67


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 320 TYFILEGGCCSIFFFEFLAWYL 385
           +YF+L+G    IF+F +L +++
Sbjct: 236 SYFLLDGSSSKIFYFNWLGFFV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,392
Number of Sequences: 5004
Number of extensions: 32634
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)