Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0075
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   1.3  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    26   5.1  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.1  
SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    25   6.7  
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos...    25   6.7  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    25   6.7  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    25   6.7  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 449 WYFEFCLSYSRL--ACLIGRVCGIYQQI*IVISNKRSDKKHGKG 324
           W  E CLS   +  ACL+      Y +  I +S K+ D  +GKG
Sbjct: 68  WQKEICLSIIAICFACLLSPSLRPYAEPFIFLSYKQPDGSYGKG 111


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 VISQERQTRLINELSRKLRQNTSYQC 320
           V  QER  +LI+E  R   +N +Y C
Sbjct: 309 VSEQERNIQLISETKRLFLRNLTYSC 334


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 127 TDIALVILKRAQNGPKENYLPP 192
           TD+A  + +R  N PK  +LPP
Sbjct: 50  TDVADELQRRINNDPKVRFLPP 71


>SPAC5H10.04 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 311 RGVLP*FTRQFINQPSLSLLAYHDLMTSDRDRTS 210
           RGVL  F R FI  P L     H +  +  DR+S
Sbjct: 326 RGVLVAFGRNFIANPDLVFRIKHHIPLNKWDRSS 359


>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1063

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 497 ARNPKLTY-NSSIKLNHIWNITHLVAGT 577
           +RN + TY + +  +NH+WN  H++  T
Sbjct: 306 SRNIEKTYKHQADAINHLWNGFHVIVST 333


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 537 SFIELL*VNLGFLA*SLEWTHGSQDRKILMVFRILFVVFTSSL 409
           S  +L+   + F A   EWT+GS D      F   +  FTSSL
Sbjct: 118 SLFQLIVNRMRFDAIHPEWTNGSDDEYFSNHFEESYDDFTSSL 160


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 1   RPRTVFFFFFCIKPFLAPRRSVINKNKI 84
           +P+T+   F+ + PFLAP +  I K  I
Sbjct: 211 KPQTMKNKFYMVIPFLAPLKKWIKKRNI 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,865
Number of Sequences: 5004
Number of extensions: 40381
Number of successful extensions: 84
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)