Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10c03
(643 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 29 0.75
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 28 1.00
SPBC1539.01c |||mitochondrial ribosomal protein subunit L15|Schi... 27 1.7
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 3.0
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 27 3.0
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 26 4.0
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.3
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 25 7.0
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha... 25 7.0
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 25 9.3
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 9.3
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 28.7 bits (61), Expect = 0.75
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 9 STYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKA 137
+ YL + CIDFFV V++ N ++A + SR + KA
Sbjct: 1009 NAYLRSTWNCIDFFVLVTLWIN-LYAVLTSHALLSRAFRAFKA 1050
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 28.3 bits (60), Expect = 1.00
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 266 NCLRPPELACLVVHLPPPASSFWSTNITVIHFNN*STAAVLQCSFDTIP*TTLID 102
N L P + +S+F S++ T I N T + L CSFD + + ID
Sbjct: 571 NTLPPTSQGATSTTVSSASSNFLSSSCTPIDDTNSVTGSTLSCSFDEMKLSDKID 625
>SPBC1539.01c |||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 1.7
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +3
Query: 90 ENKYIYQSRLWNCIK 134
ENK++++S WNC++
Sbjct: 14 ENKFVFRSSSWNCVR 28
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +3
Query: 444 YNLDDMSYSLEEAENMDLRENI 509
Y++ D SYS+ E + ++REN+
Sbjct: 1096 YDIHDQSYSVHELHSENMRENV 1117
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.0
Identities = 23/68 (33%), Positives = 33/68 (48%)
Frame = +3
Query: 3 INSTYLLLNYYCIDFFVYVSILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNN 182
I+S L+N I +++ +EI ENK+I L N I++ L C G+I K
Sbjct: 397 ISSILQLMNGLSISSYMFAITKMDEIEWDENKFI---NLVNSIQSFLKESC-GIIEKSKF 452
Query: 183 GDISAPKG 206
IS KG
Sbjct: 453 IPISGLKG 460
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 26.2 bits (55), Expect = 4.0
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Frame = +3
Query: 60 SILANEIHAYENKYIYQSRLWNCIKAAL*NCCRGLIVKMNNGDISAPKGRGRGWQMNNQA 239
+I A+E YEN + SRL+ CR + +N G A G R +N
Sbjct: 279 TIDAHESSLYEN--VNDSRLYEV------PACRNMA--LNTGYSDADPGYLRTSFRSNSH 328
Query: 240 RELRRPKAVSDEPKVDTSKSKLSADAK--EWYPANYTSQALPAYNTEPAPYRPS 395
L P + ++E V + +S + Y ++ ++P Y EP P RPS
Sbjct: 329 NSL--PYSANEEEDVLQADFLVSQQSSMVSSYVSSRDPHSMPYYRREPIPLRPS 380
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 318 KEWYPANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPYNLDDMS 464
K +PA+Y+S A N + + + S+ G ++ + + P NL S
Sbjct: 422 KSIFPASYSSSAEDGQNMQAPAHAYMQSSIYGVNQEQKSEYPSNLSMQS 470
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 453 DDMSYSLEEAENMDLRENIANLITVMCE 536
DD S+ + E+ +RE + I V+CE
Sbjct: 7 DDFSFEKRKTESQRIREKYPDRIPVICE 34
>SPBC887.10 |mcs4||two-component response regulator
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 7.0
Identities = 21/91 (23%), Positives = 39/91 (42%)
Frame = +3
Query: 222 QMNNQARELRRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAPYRPSRP 401
Q +++A + R ++ + D S ++ A A+ P N S + + T+ + P
Sbjct: 225 QPSDEAESITRKNSIGMSTRSDESTAEKLAKAEVATPTNSRSISHSSLYTKQSGTAGVLP 284
Query: 402 SVQGRLRQAQDQNPYNLDDMSYSLEEAENMD 494
+V + A NP D+S A+N D
Sbjct: 285 AVNADIDAANRMNP----DISSQFPIADNKD 311
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 285 DTSKSKLSADAKEWYP-ANYTSQALPAYNTEPAPYRPSRPSVQGRLRQAQDQNPY 446
+ +K+K A+ P A S + + +P+ Y +R LRQ +D NPY
Sbjct: 41 ELAKAKKQAEKAASAPVAAPKSSSKKEEDLDPSQYFENRSRTIMELRQTKDPNPY 95
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 249 RRPKAVSDEPKVDTSKSKLSADAKEWYPANYTSQALPAYNTEPAP 383
RR ++ SDE + S +S ++ + + + + P+ T P P
Sbjct: 320 RRSRSYSDEDEESVYSSDVSTESSSQFSSRSSEYSKPSRPTAPKP 364
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,987
Number of Sequences: 5004
Number of extensions: 60190
Number of successful extensions: 193
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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