Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b23
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    29   0.38 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   4.7  
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    25   6.2  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   8.3  

>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 264 QPSNENNNAGGKGSDSSNAVEPSSDQLA 347
           QPS+ NN    +G    NA +PSSD LA
Sbjct: 116 QPSDANNFYNLRGDGRYNAYDPSSDSLA 143


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 205  LSRILYCF--NRFYKRSS*RFRDRVLVSQINAHSITDIKLPII 83
            L +I  C+  N  Y  S   F   +L + +N  S T +KLP++
Sbjct: 1102 LMKIFRCWFENEAYLDSVLEFSSHILTALLNTASHTAVKLPVL 1144


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 565 RKPAPSSFLWWLTGGPRAYCFVCIGWWF 482
           R   P  F WW+  GP  + F    WW+
Sbjct: 504 RDLGPRMFAWWIGYGP--HSFHLYHWWW 529


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +3

Query: 243 MSGTLSDQPSNENNNAGGKGSDSSNAVEPSSDQLAMESAERDAPSHAYNG 392
           M G++S +PS+E+ N G    + +      +D+L  E+    + + +  G
Sbjct: 37  MPGSISVEPSSEDANVGSVNGNINETPVFEADRLIAEATMNPSAASSTTG 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,094,002
Number of Sequences: 5004
Number of extensions: 34876
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)