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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10b19
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...   276   2e-75
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...   164   1e-41
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...   158   8e-40
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...   138   7e-34
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...   118   6e-28
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...   116   3e-27
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...   113   2e-26
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    36   0.007
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    32   0.092
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    29   0.49 
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    29   0.86 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    27   3.5  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    26   4.6  
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces...    26   4.6  
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom...    26   6.0  
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.0  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    25   8.0  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   8.0  
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    25   8.0  

>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score =  276 bits (677), Expect = 2e-75
 Identities = 148/241 (61%), Positives = 179/241 (74%), Gaps = 13/241 (5%)
 Frame = +2

Query: 17  SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSV 196
           +++Y+FSLTTFSP+GKLVQIEYAL AV AG TSVGIKA++GVV+ATE K  S L    S+
Sbjct: 2   TDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASL 61

Query: 197 NKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQ-YFLMYHEPIPTAQLVQRVATVMQEY 373
            KV  IT  IGMVYSGMGPD+R+LV ++RK+AQ  Y  +Y+E  PT  LVQ +A+VMQE 
Sbjct: 62  EKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQES 121

Query: 374 TQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED 553
           TQSGGVRPFGVSLL+ G +E  P L+Q DPSG YFAWKATA+GK+    KTFLEKRY ++
Sbjct: 122 TQSGGVRPFGVSLLVAGMDEKGPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDE 181

Query: 554 LELDDAVHTAILTLKEGFEGQMTADNIEV----------GICDASG--FRRLXPAHVKDY 697
           LELDDAVHTAIL LKE FEG++T DNIE+          GI    G  F RL  + ++DY
Sbjct: 182 LELDDAVHTAILALKETFEGELTEDNIEIAVVSTKPTDSGIVGVPGGHFCRLSQSEIRDY 241

Query: 698 L 700
           L
Sbjct: 242 L 242


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  164 bits (398), Expect = 1e-41
 Identities = 82/211 (38%), Positives = 128/211 (60%), Gaps = 2/211 (0%)
 Frame = +2

Query: 26  YSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKV 205
           Y  +L+ FSP G+L+Q+EY   AV  G T++ ++ +  +VI  E K+   L +  +  K+
Sbjct: 4   YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKI 63

Query: 206 EMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSG 385
            M+  H+ + ++G+  D R+L+ +AR  AQ + L   +P+    L + VA V Q+YTQSG
Sbjct: 64  AMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSG 123

Query: 386 GVRPFGVSLLICGWEEG--RPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLE 559
           GVRPFGVS LI G++ G   P ++Q +P+G Y AWKATA+G+     + +LEK + E L 
Sbjct: 124 GVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLS 183

Query: 560 LDDAVHTAILTLKEGFEGQMTADNIEVGICD 652
            D+ +H A+ +L E    Q  + NIE+ I D
Sbjct: 184 RDETIHLAVSSLLEVV--QTASGNIELAIMD 212


>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score =  158 bits (383), Expect = 8e-40
 Identities = 82/210 (39%), Positives = 125/210 (59%), Gaps = 3/210 (1%)
 Frame = +2

Query: 17  SERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKS-ILYDEHS 193
           S  Y    T FSP G+L Q+EYAL A+   G ++GI A +G+V+A E K  S +L  E S
Sbjct: 2   SRSYDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEES 61

Query: 194 VNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEY 373
             K+  I  ++    +G+  D  +L+  AR++ QQY   ++E +P  QLV+RV  + Q Y
Sbjct: 62  AEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGY 121

Query: 374 TQSGGVRPFGVSLLICGWEEGRPY-LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTE 550
           TQ GG+RPFGVS L  GW+  R Y LFQ +PSG Y +W+A ++G N  + ++ + + Y +
Sbjct: 122 TQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKD 181

Query: 551 DLELDDAVHTAILTLKEGFE-GQMTADNIE 637
           D+ LD+A   A+  L +  +   +T + IE
Sbjct: 182 DINLDEASAMAVKFLSKTLDSNSLTHEKIE 211


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score =  138 bits (334), Expect = 7e-34
 Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 6/225 (2%)
 Frame = +2

Query: 5   VIMASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYD 184
           + M    Y   + TFSP G+L Q+EYA+ A+  G T++G+K  + VV+  E +  S L +
Sbjct: 1   MFMTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLME 60

Query: 185 EHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVM 364
            HSV K+  I  HIG   SG+  D R ++  AR   Q +   Y EP       Q +  + 
Sbjct: 61  SHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLA 120

Query: 365 QEYTQSGG------VRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKT 526
             + +          RPFGV+LLI G +E  P L+  +PSG YF ++A A+G      K+
Sbjct: 121 LRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKS 180

Query: 527 FLEKRYTEDLELDDAVHTAILTLKEGFEGQMTADNIEVGICDASG 661
            L K + +D+ L++A    +  L++  E ++ + N+++    A G
Sbjct: 181 ELVKEFHKDMTLEEAEVLILKVLRQVMEEKLDSKNVQLAKVTAEG 225


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score =  118 bits (285), Expect = 6e-28
 Identities = 77/228 (33%), Positives = 115/228 (50%), Gaps = 6/228 (2%)
 Frame = +2

Query: 35  SLTTFSPSGKLVQIEYALAAVA-AGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEM 211
           ++T FSP G+L Q+EYA  A   AG TSVG+   N   + ++ K    L D  +V  V  
Sbjct: 10  TITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVKHVFP 69

Query: 212 ITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGV 391
           IT  IG V +G   D R  V++AR  A ++      P+P   L +R+A + Q  TQ   +
Sbjct: 70  ITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAM 129

Query: 392 RPFGVSL-LICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTED---LE 559
           RP GV++ L+   +E  P LF+ DP+G Y  +KAT+ G        +LEKR+ +D     
Sbjct: 130 RPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSN 189

Query: 560 LDDAVHTAILTLKEGFEGQMTADNIEVGIC-DASGFRRLXPAHVKDYL 700
           L D V T I  L         +  +++G+  D   FR L    ++ +L
Sbjct: 190 LTDTVETGIQALMSSLSTDFKSTELQIGVVEDDKPFRVLSVEEIEAHL 237


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score =  116 bits (279), Expect = 3e-27
 Identities = 62/216 (28%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
 Frame = +2

Query: 11  MASERYSFSLTTFSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEH 190
           M   +Y    TT+SP G+L Q+EYAL A+  G  +VG+ +    V+    ++   L    
Sbjct: 1   MFRNQYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSSYQ 60

Query: 191 SVNKVEMITGHIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQE 370
              K+  I  HIG+  +G+ PD R+L    ++ A     ++  PIP  +L+ +VA   Q 
Sbjct: 61  K--KLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQI 118

Query: 371 YTQSGGVRPFGVSLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYT- 547
            TQ  G RP+GV  L+ G++E  P+L +  PSG    +  T+MG    + +T++E+    
Sbjct: 119 NTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDT 178

Query: 548 -EDLELDDAVHTAILTLKEGF--EGQMTADNIEVGI 646
             D   ++ + +A+  L++    + ++T +N+ + +
Sbjct: 179 FPDSSREELILSALRALRDTLSKDQELTEENVSISV 214


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score =  113 bits (272), Expect = 2e-26
 Identities = 61/179 (34%), Positives = 91/179 (50%)
 Frame = +2

Query: 47  FSPSGKLVQIEYALAAVAAGGTSVGIKASNGVVIATENKHKSILYDEHSVNKVEMITGHI 226
           FSP G+L Q EYA  AV    T +GIK  +GV++A E    S L      N++  +  HI
Sbjct: 14  FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLKPRVNNRIGSVDRHI 73

Query: 227 GMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGV 406
           G+  +G  PD + +V +AR  A  +   Y  PIP   +  R+   +Q +T    VRPFGV
Sbjct: 74  GIATTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGV 133

Query: 407 SLLICGWEEGRPYLFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTA 583
              +  ++   P+L+  +P+G Y+ +   A GK     +  LEK     L++ DAV  A
Sbjct: 134 MSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGKGRQVARNELEKLNFSSLKMKDAVKEA 192


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 43/189 (22%), Positives = 80/189 (42%), Gaps = 2/189 (1%)
 Frame = +2

Query: 92  AVAAGGTSVGIKASNGVVIATENKHKS--ILYDEHSVNKVEMITGHIGMVYSGMGPDYRL 265
           A + G T VG+ A + +V+  + +  +  I+ D++   K+ +I+ +I    +G   D   
Sbjct: 31  ATSTGTTIVGVIAKDCIVLGADTRATAGPIIADKNC-KKLHLISPNIWCAGAGTAADTEF 89

Query: 266 LVTQARKMAQQYFLMYHEPIPTAQLVQRVATVMQEYTQSGGVRPFGVSLLICGWEEGRPY 445
           + +      + + L Y    P  ++V  +  + Q   +  G    G  L++ G++   P+
Sbjct: 90  VTSMISSNIELHSL-YTNRKP--RVVTALTMLKQHLFRYQG--HIGAYLVLGGYDCKGPH 144

Query: 446 LFQCDPSGAYFAWKATAMGKNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFEGQMTA 625
           LF     G+       A+G       + LE +Y  DLE     H A+  +KE  E  +  
Sbjct: 145 LFTIAAHGSSDKLPYVALGSGSLAAISVLETKYQPDLER----HEAMELVKEAIEAGIFN 200

Query: 626 DNIEVGICD 652
           D      CD
Sbjct: 201 DLGSGSNCD 209


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 31.9 bits (69), Expect = 0.092
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +2

Query: 179  YDEHSVNKVEMITG----HIGMVYSGMGPDYRLLVTQARKMAQQYFLMYHEPIPTAQLVQ 346
            Y +H+VNK+++IT         V      D+  L T  RK+   Y+ +Y  P    +L++
Sbjct: 1589 YSQHTVNKIQIITNITLDFDSFVLRTTVNDFLFLQTILRKIYNFYYALYDVPTTDVELLK 1648

Query: 347  R 349
            R
Sbjct: 1649 R 1649


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 231  MPMWPVIISTLLTLCSSYSM 172
            +P+WP+++S LL +  SY M
Sbjct: 1508 LPLWPIVVSELLIIFKSYCM 1527


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = -2

Query: 663 NPLASQMPTSMLSAVI*PSKPSLRVKIAV*TASSNSKSSVY 541
           N L S + TS +S V  PSK   ++KI+  T  S S  S+Y
Sbjct: 276 NQLLSHLVTSSISIVSKPSKKGSKLKISNITLRSGSVVSLY 316


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = -2

Query: 219 PVIISTLLTLCSSYSMLLCLFSVAITTPFDALMPTEVPPAA 97
           P +++T    CSS   L  L  +    P  A +P + PP A
Sbjct: 265 PTLLNTYGNRCSSTDTLSSLSRLTSQDPLKASLPLQSPPLA 305


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 7/30 (23%), Positives = 18/30 (60%)
 Frame = -2

Query: 225  MWPVIISTLLTLCSSYSMLLCLFSVAITTP 136
            +W +++  L  +  ++S ++C+F V +  P
Sbjct: 2245 LWALLLGVLAWISRTHSWIICVFGVGLGAP 2274


>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
 Frame = +2

Query: 440 PYLFQCDPSGAYFAWKATAMG---KNFNNGKTFLEKRYTEDLELDDAVHTAILTLKEGFE 610
           P++ QCD +     W  T MG    N  N  T     Y    + D+A  TA+   +  F+
Sbjct: 227 PFITQCDTATGDNYWAGTYMGDFVSNITNVLTNSTGHYCTTQQEDNASLTAL--TRASFD 284

Query: 611 GQMTADNIEV 640
           G +  + + +
Sbjct: 285 GLVNINRVVI 294


>SPAPB1A11.01 ||SPAPB24D3.11|membrane
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -2

Query: 222 WPVIISTLLTLCSSYSMLLCLFSVAITTP 136
           WP+ I  + T+  S+  +LC++  ++  P
Sbjct: 33  WPIRIRIINTIIISFMTMLCMYGSSVFMP 61


>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 345

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 155 ENKHKSILYDEHSVNKVEMITGHIGMVYSGMGPDYRLLVTQARK 286
           EN+ + +   +   N +E +T HI   Y G G  +    T +RK
Sbjct: 21  ENRKEEVSTLQDMANDLEKLTDHIEATYIGRGVPHDHAKTGSRK 64


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
 Frame = +2

Query: 119 GIKASNGVVIATENKHKSILYDEH----SVNKVEMITGHIGMVYSGMGPDYRLLVTQARK 286
           G+K  + + I+ +  H  +++D H    ++N+ E+    IG    G+GP Y    T+A +
Sbjct: 103 GLKCRDRIFIS-DRAH--LVFDYHQRADALNEAELGKQSIGTTGKGIGPAYS---TKATR 156

Query: 287 MAQQYFLMYHEPIPTAQLVQRVATVMQEY 373
              +   +YH     A+  + VA + + Y
Sbjct: 157 SGIRVHHLYHWAEFEARYRKNVADLQKRY 185


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 122 CRRKYHRRLRQLKHIR 75
           C+R +HR+  Q++HIR
Sbjct: 9   CKRVFHRQEHQVRHIR 24


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 527 KFFHY*SSFPWLWLSMQNRLRRGHTGTGKDVLLPSHRSIEI 405
           K F Y     + W++  NR+ R  +G  + +L PS   I I
Sbjct: 4   KSFKYPKKHKFEWINETNRVERVGSGLKRVILCPSMELIAI 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,075,068
Number of Sequences: 5004
Number of extensions: 65717
Number of successful extensions: 178
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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