Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10d11
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...   152   5e-38
SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual      32   0.078
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar...    30   0.31 
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    27   1.7  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   2.2  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    26   3.9  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   3.9  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    25   6.8  

>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score =  152 bits (368), Expect = 5e-38
 Identities = 79/150 (52%), Positives = 100/150 (66%), Gaps = 2/150 (1%)
 Frame = +2

Query: 185 MPNIKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQW 364
           M  IKL SSDNE FVVD  IA+ S+ IK                PLPNV+S +L+KV++W
Sbjct: 1   MSKIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPI---PLPNVSSNVLRKVLEW 57

Query: 365 ATYHKDD--PPLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILAANYLDIKGLLDVT 538
             +HK+D      E+ + + K++ DI  WD  F+ VDQ  LFE++LA+NYLDIK LLD  
Sbjct: 58  CEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTG 117

Query: 539 CKTVANMIKGKTPEEIRKTFNIKNDFTAAE 628
           CKTVANMI+GK+PE+IRKTFNI NDFT  E
Sbjct: 118 CKTVANMIRGKSPEDIRKTFNIPNDFTPEE 147


>SPBC1861.07 |||elongin C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 97

 Score = 31.9 bits (69), Expect = 0.078
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
 Frame = +2

Query: 194 IKLQSSDNEVFVVDVEIAKCSVTIKTXXXXXXXXXXXXXXXPLPNVNSAILKKVIQWATY 373
           ++L S D  VF+++ EIA  S TI+                  P++ + +L+KV ++  Y
Sbjct: 6   VRLISGDGFVFILEKEIACLSGTIRAILNEGIFSEAQKNECTFPDIRATLLEKVCEYLHY 65

Query: 374 ---HKDDPPLPEDD 406
              +K+   +P+ D
Sbjct: 66  NYRYKNQLDIPKFD 79


>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 389 PLPEDDENKEKRTDDISSWDADFLKVDQGT 478
           P+P  D NK   T D+SSW+ D+  +  G+
Sbjct: 9   PIPRSDSNK---TSDVSSWEEDYELISLGS 35


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 389 PLPEDDENKEKRTDDISSWDADFLKVDQGTLFELILA-ANYLDIKGLLDVTCKTVA 553
           P  +DD N +  +DD S+ D    ++D   L E +L   N    + L D+T  T+A
Sbjct: 207 PEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLKYMNRCSTQDLADMTGCTLA 262


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/45 (31%), Positives = 28/45 (62%)
 Frame = +3

Query: 120 HFRLKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKSPNA 254
           +F+LK   ++L+ + ++L K+       N+Q+T + + + KSPNA
Sbjct: 31  NFKLKSPSYYLLNSFKLLVKSEG-----NNQSTTADVTLTKSPNA 70


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 527 LDVTCKTVANMIKGKTPEEIRKTFNIKNDFT 619
           L VT KTV   + G TP+  R+  N+  D +
Sbjct: 96  LQVTPKTVDKSLLGPTPQLSRRVLNLLEDMS 126


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 126 RLKINKFHLIVNIQILEKTRCQILSCNHQTTRSSLLMLKS 245
           +LKI      V + ILEK   ++  C+H+   S  L L S
Sbjct: 208 KLKIENNSRSVKLSILEKALKEVKGCDHEILVSYYLQLGS 247


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 153 LSEIYLSSNENALMFW 106
           L+ IY++ N+NAL FW
Sbjct: 537 LAPIYVTFNDNALTFW 552


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,987
Number of Sequences: 5004
Number of extensions: 45183
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)