Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt10b20
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   2.6  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    27   3.4  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   5.9  
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    25   7.8  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    25   7.8  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   7.8  

>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = +2

Query: 353 VFGFLSDVTSTITSWVTTAFNT----SSLRDVYHVMEALFNCCG--TTGPSSYDGILSQL 514
           V  +L+ +T  IT +V T F T    S+ +D   +  AL N     T  PSS D     L
Sbjct: 247 VRSYLTLLTELIT-YVKTHFKTGLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGL 305

Query: 515 PPSCCASPVDNTFYAPNAFP 574
           PP     P  N F+  +  P
Sbjct: 306 PPPPPPPPPSNDFWKDSNEP 325


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = +2

Query: 290 LITYSIFMVILVAVKIYLAIVVFGFLSDVTSTITSWVTTAFNTSSLRDVYHVMEALFNCC 469
           ++  S+F+V ++A +I     VF  +S     +TS +++ +  ++    Y++ +AL   C
Sbjct: 237 VLCVSLFLVNIIADRILYGRFVFPIISFFQFNVTSGLSSLYGLNAWH--YYLSQALPLIC 294

Query: 470 G 472
           G
Sbjct: 295 G 295


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 125 LAIIRLGVAVLRNLRDLQDILPVNAL 202
           + I +  VA+++   DLQD LP+ AL
Sbjct: 661 IPIFKCHVAIVQYFHDLQDYLPIVAL 686


>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 388 YCAGDVGQKTEYH 350
           +C GD G+KT++H
Sbjct: 741 FCTGDFGEKTDWH 753


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 373 VGQKTEYHDSQVDLHGH 323
           +G K+ YH S VD+H H
Sbjct: 153 IGWKSIYHASDVDVHDH 169


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 371 DVTSTITSWVTTAFNTSSLRDVYHVMEALF 460
           ++ S+  SW +   N+  L+D+Y + E LF
Sbjct: 277 EIGSSTWSWPSQNCNSVLLKDIYKLQEILF 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,066
Number of Sequences: 5004
Number of extensions: 57544
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)