Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= an--0052
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   4.2  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    25   9.7  

>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 428 HLKMHNI*YCIDKDRGILYTPNWN 499
           H+   N  YCIDKD+ +   P+ N
Sbjct: 180 HISYQNGLYCIDKDKSLTKEPSVN 203


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +3

Query: 204 NFILTVSVVHARANDVSKSNGVTASIDFDFIING 305
           NFIL   +V A AN +    G T   D    ING
Sbjct: 569 NFILPTVLVVALANSIGNMLGKTGIADRSIEING 602


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,548
Number of Sequences: 5004
Number of extensions: 39626
Number of successful extensions: 55
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)