Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0076
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    28   1.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    28   1.6  
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    25   8.5  

>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = +2

Query: 77  PEWTQDTARSRGLHYARSKMIYSLTTRNLFLKIKTADSHIGKQTKINFNTSLH*FIFLLN 256
           P WT+  A S   +Y  +++  S   R  F++   + S    Q  + FNTS   F+    
Sbjct: 7   PGWTEHKAPSGIPYYWNAELKKSTYQRPSFIEKNHSSSVTASQASLAFNTSEKLFVNENA 66

Query: 257 ESECRAQGFNKQI 295
           E    ++   KQ+
Sbjct: 67  EERKNSRDLRKQL 79


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +2

Query: 353 FSTKYSHMLRIYSLKVKDIPK*IFECTKYKHRNYNFAFVHFSFFSLKYIFTNNWVVVQF 529
           F+T Y   L +Y +   +    +    + +  + + +++  +FF+L ++F+NN V+  F
Sbjct: 681 FATTYESFLYMYQILTSENWTDVMFAIQARLAHLHLSWIPGAFFTLWFLFSNNVVLSMF 739


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 603 HFFLIVT*HVYNDRERTFLVFYNAQGFDILRHEN 704
           H  L  T +  +D ERT L F+   G D+L   N
Sbjct: 15  HLILFPTPYEEHDCERTVLAFFCLLGLDLLNALN 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,817,364
Number of Sequences: 5004
Number of extensions: 56356
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)