Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0153
(668 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 36 0.005
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.11
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 29 0.80
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po... 27 1.8
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 27 2.4
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 2.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 2.4
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.2
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 4.3
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 26 5.6
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 7.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 7.5
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 7.5
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 9.9
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 25 9.9
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 35.9 bits (79), Expect = 0.005
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Frame = +2
Query: 122 PSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIA 301
PS V N+ + + Q+ + P V+ A+P P+ATH P + + A A
Sbjct: 324 PSASTSAVTNITKPTLIQNPSTPLSVSNSKVASPETPNATHTAPKVEMRYASAAAAAAAA 383
Query: 302 L--NMP--EYQIQQVQPTSSN 352
L P Y +QQV+P + N
Sbjct: 384 LAKESPSHHYIMQQVRPETPN 404
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.5 bits (68), Expect = 0.11
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Frame = +2
Query: 170 SQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSS 349
S HQ P + VAP++ + P P+A V + AL++P+ + V P
Sbjct: 528 SVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVP 587
Query: 350 NV----VAPLSSQSLSLPKATVTQAIRQV 424
+V VAP+ ++ S+P+ V +V
Sbjct: 588 SVPQPPVAPVVPEAPSVPQPPVAPVAPEV 616
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 28.7 bits (61), Expect = 0.80
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 500 VAANSPGALAGLRFGDQILEINNVT 574
VA SP AGL GD+++ + NVT
Sbjct: 135 VAVESPAQEAGLCIGDELVHVQNVT 159
>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 27.5 bits (58), Expect = 1.8
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Frame = +2
Query: 95 FSVSIMSFYPSLEDMKVDNMMRAQISQHQAPPSYVAPQ---------LCATPSAPSATHV 247
F ++ L ++ V N ++ + +A P Y+A + TP+ + T
Sbjct: 170 FKKNVPCVVDGLNEVNVLNQLKLSAEETRAHPFYLAKGKSGENKNEWIINTPNWGTNTFS 229
Query: 248 YPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSSNVV 358
P G+Y G L+ AV AL++ + P N V
Sbjct: 230 TPLKGDYQGQNLACAVTALDILSSSFSIMLPHVQNGV 266
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 27.1 bits (57), Expect = 2.4
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = +2
Query: 179 QAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSSNVV 358
Q PS+ APQ PS S ++V P L + + +++ P Y Q + SS+ V
Sbjct: 263 QLAPSFAAPQAHPLPSHLSQSNVPPQL-SHSSVPSPAPPRSVSQPTYFSQPMPQFSSSFV 321
Query: 359 APLSS 373
SS
Sbjct: 322 PGTSS 326
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 338 PTSSNVVAPLSSQSLSLPKATVTQAIRQVVLCKDRNGKCGLRLHSVDSGVFVCYVAANSP 517
P S +AP + SLS P+ T+ Q++ + L N + + + +G F V+A+ P
Sbjct: 298 PLQSPPLAPKTGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLP 357
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/48 (27%), Positives = 23/48 (47%)
Frame = +2
Query: 269 MGMELSQAVIALNMPEYQIQQVQPTSSNVVAPLSSQSLSLPKATVTQA 412
M +S A N P Q +P ++ AP++S + ++ +AT A
Sbjct: 1012 MANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTSTTTTIKQATTVSA 1059
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.6 bits (56), Expect = 3.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 161 AQISQHQAPPSYVAPQLCATPSAPSATHV 247
A I+Q+ PS +AP + A SAPSA V
Sbjct: 1747 APINQNAYVPSNIAPAMGAMQSAPSAEAV 1775
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 26.2 bits (55), Expect = 4.3
Identities = 22/89 (24%), Positives = 39/89 (43%)
Frame = +2
Query: 122 PSLEDMKVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIA 301
PS D K ++ + + + P+ +P L A + + +L M S + A
Sbjct: 322 PSSNDTKQESSL-IDLMKLTEEPAVPSPSLPTNVPANQSLSMLSSLSNSMS---STSNGA 377
Query: 302 LNMPEYQIQQVQPTSSNVVAPLSSQSLSL 388
LN P Y + T+S++ + L S SL +
Sbjct: 378 LNSPSYSQAAIPNTNSSLTSILQSDSLMI 406
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/78 (23%), Positives = 40/78 (51%)
Frame = +2
Query: 140 KVDNMMRAQISQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEY 319
++ + + ++ H PPS++ P+L + S P+ + + E + LS+ + + P
Sbjct: 358 RLSSFLYHKLLGHDIPPSFLKPKLPSDLSVPNLPKLNASQSEAVRAVLSKPLSLIQGPPG 417
Query: 320 QIQQVQPTSSNVVAPLSS 373
+ V TS++VV L++
Sbjct: 418 TGKTV--TSASVVYHLAT 433
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 640 GDIICRSFLKDI-MTFIHCHSSNSDIID 560
GDI S I +T IHCHSS ++D
Sbjct: 147 GDIYLASLDTAIPVTLIHCHSSAVQVVD 174
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 7.5
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Frame = +2
Query: 122 PSLEDMKVDNMMRAQISQH-QAPPSYVAPQLCATPSAPSATHVYPTLGEYMGM--ELSQA 292
P D +N + I Q PSY P + PSA ++ PT + E +
Sbjct: 291 PEFNDYFKENGLNYDIDQLISKAPSY--PYSSSRPSASASLASSPTRSAFRPKTSETVSS 348
Query: 293 VIALNMPEYQIQQ-VQPTSSNVVAPLSSQSLSLPKATVTQAIRQ 421
+ + P + V+P S+ V ++ LS+P ++ +A Q
Sbjct: 349 EVVSSPPTSPLHSPVKPVSNEQVEQVTEVELSIPVPSIQEAESQ 392
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 29 IALFSGYFGLTINYCIFLLLLEFSVSIMSFYPSLEDMKV 145
+A+F + G ++C+FL+ L VS P D+ +
Sbjct: 511 LAVFRPFVGFKNSFCVFLVALTRVVSFALLIPIAFDLAI 549
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/86 (22%), Positives = 35/86 (40%)
Frame = +2
Query: 170 SQHQAPPSYVAPQLCATPSAPSATHVYPTLGEYMGMELSQAVIALNMPEYQIQQVQPTSS 349
S H P S Q + S+ + + E + + + +I PTS
Sbjct: 1156 SNHSNPWSVATHQRGSFSSSTGVKKSFNGILREAAREEGSSQVIYQESKKRISNGSPTSW 1215
Query: 350 NVVAPLSSQSLSLPKATVTQAIRQVV 427
N++ S +S SLPK + +I +++
Sbjct: 1216 NLLTKPSPRSASLPKNSQPLSISEIM 1241
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/38 (23%), Positives = 21/38 (55%)
Frame = +2
Query: 317 YQIQQVQPTSSNVVAPLSSQSLSLPKATVTQAIRQVVL 430
+ + ++ T + ++AP + Q+LSL VT + ++
Sbjct: 329 FVVNELYTTRTRIIAPSAFQTLSLSSVMVTSFLHYYIM 366
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 395 ATVTQAIRQVVLCKDRNGKCGLRLHSVDS 481
ATVT AIRQ+ +N K L L+ V++
Sbjct: 194 ATVTDAIRQLKYQPQKNNKPPLWLYEVET 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,838
Number of Sequences: 5004
Number of extensions: 56517
Number of successful extensions: 163
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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