Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Nnor0110
(631 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 95 6e-21
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 55 1e-08
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 48 8e-07
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 46 3e-06
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 45 1e-05
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 35 0.011
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.42
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 27 2.2
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 27 3.0
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 6.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 25 6.8
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 95.5 bits (227), Expect = 6e-21
Identities = 69/211 (32%), Positives = 105/211 (49%), Gaps = 2/211 (0%)
Frame = +1
Query: 4 RAFELLRSGLDRSKYLLVKEAKIIAMTCTHAALKRSELVQMGFKYDNILMEESAQILEIE 183
R F LLR D+ Y L ++++II T T + + L + GF ++N+++ S I E
Sbjct: 929 RPFGLLRYYEDQELYALCQQSRIIGCTWTSLSTRLGTLKEKGFCFNNLIVMNSQNISE-S 987
Query: 184 TFIPLLLQNPQDGRSRLKRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRMVRLGVPYV 363
+ +LL N + + R +++G+ + N N SLF R+ L +
Sbjct: 988 SITSILLSNCEP--TGFDRLVLLGNQYLTSG---NQDINNTSN--GSLFKRLRYLKSRII 1040
Query: 364 ELDAQGRARPSICNLYRWRYRALGDLCHVTQLPEYRA--ANAGLRHDFQLVNVDDFNGFG 537
+L+ Q R SI +L Y D+ V P R N+G H+ Q +NV F G
Sbjct: 1041 DLNTQYNVRESISSLCSSIYPL--DIKTVDSSPNKRLDYGNSGFAHEVQFINVGAFKGSQ 1098
Query: 538 ETEPSPYFYQNLAEAEYVVAVFMYMRLIGWP 630
ETEP + QNL EAEY VA+F YMR++G+P
Sbjct: 1099 ETEPVSGYKQNLGEAEYAVALFQYMRMLGYP 1129
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 54.8 bits (126), Expect = 1e-08
Identities = 38/116 (32%), Positives = 59/116 (50%)
Frame = +1
Query: 52 LVKEAKIIAMTCTHAALKRSELVQMGFKYDNILMEESAQILEIETFIPLLLQNPQDGRSR 231
L++ A +I TC A +R +K+ ++L++E+ Q E E IPL+L
Sbjct: 534 LLRAAHVICCTCVGAGDRRISK----YKFRSVLIDEATQASEPECMIPLVLG-------- 581
Query: 232 LKRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRMVRLGVPYVELDAQGRARPSI 399
K+ +++GDH QL PVV N ++ QSLF R++ LG L Q R P +
Sbjct: 582 AKQVVLVGDHQQLGPVVMNKKV-ALASLSQSLFERLIILGNSPFRLVVQYRMHPCL 636
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 48.4 bits (110), Expect = 8e-07
Identities = 52/189 (27%), Positives = 78/189 (41%), Gaps = 1/189 (0%)
Frame = +1
Query: 49 LLVKEAKIIAMTCTHAALKRSELVQMGFKYDNILMEESAQILEIETFIPLLLQNPQDGRS 228
+L++ A +I MT T R L ++ K +EE+A +LE IP + +
Sbjct: 678 ILLRGANVIGMTTTGLNKYRDILERINPKI--CFIEEAADVLE-GPIIPAVFPS------ 728
Query: 229 RLKRWIMIGDHHQLPPVVKNMAF-QKYCNMEQSLFTRMVRLGVPYVELDAQGRARPSICN 405
L++ ++IGDH QL P A Q N+ S+F R+V + Y L Q R P I
Sbjct: 729 -LEQLVLIGDHKQLRPGCSTYALRQDPFNLSISMFERLVENDMEYTRLTMQRRMHPQIRR 787
Query: 406 LYRWRYRALGDLCHVTQLPEYRAANAGLRHDFQLVNVDDFNGFGETEPSPYFYQNLAEAE 585
L Y L D P R ++D +GF NL EA+
Sbjct: 788 LVSSVYEDLSDYEITKYWPSIPGMGEIRRFFLTHSRIEDNDGFASK-------INLFEAQ 840
Query: 586 YVVAVFMYM 612
+V +Y+
Sbjct: 841 MLVQFAVYL 849
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 46.4 bits (105), Expect = 3e-06
Identities = 51/196 (26%), Positives = 88/196 (44%), Gaps = 6/196 (3%)
Frame = +1
Query: 52 LVKEAKIIAMTCTHAALKRSELVQMGFKYDNILMEESAQILEIETFIPLLLQNPQDGRSR 231
L++EA I+ T + A L+ G + ++++E+AQ +E+ + IPL +
Sbjct: 1484 LLQEADIVCATLS--ASGHELLLNAGLTFRTVIIDEAAQAVELSSIIPL--------KYG 1533
Query: 232 LKRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRMVRL-GVPYVELDAQGRARPSICN- 405
+ +M+GD +QLPP V + K+ QSL+ RM + L Q R P I
Sbjct: 1534 CESCVMVGDPNQLPPTVLSKTSAKF-GYSQSLYVRMFKQHNESACLLSIQYRMNPEISRF 1592
Query: 406 ----LYRWRYRALGDLCHVTQLPEYRAANAGLRHDFQLVNVDDFNGFGETEPSPYFYQNL 573
Y + ++ VT P + G+ ++ NV F ++ S Y N+
Sbjct: 1593 PSKFFYNSKLLDGPNMSAVTSRPWHEDPQLGI---YRFFNVHGTEAFSNSK-SLY---NV 1645
Query: 574 AEAEYVVAVFMYMRLI 621
EA ++ + +Y RLI
Sbjct: 1646 EEASFI--LLLYERLI 1659
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 44.8 bits (101), Expect = 1e-05
Identities = 27/101 (26%), Positives = 53/101 (52%)
Frame = +1
Query: 37 RSKYLLVKEAKIIAMTCTHAALKRSELVQMGFKYDNILMEESAQILEIETFIPLLLQNPQ 216
+++ ++K+A ++ T + + + + ++++E+AQ +E++T IPL
Sbjct: 1341 KAQKAILKQADVVCATLSGSG--HDLVAHSSLNFSTVIIDEAAQAVELDTIIPL------ 1392
Query: 217 DGRSRLKRWIMIGDHHQLPPVVKNMAFQKYCNMEQSLFTRM 339
R K+ I++GD +QLPP V + N QSLF R+
Sbjct: 1393 --RYGAKKCILVGDPNQLPPTVLSKKAAS-LNYSQSLFVRI 1430
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 34.7 bits (76), Expect = 0.011
Identities = 19/57 (33%), Positives = 35/57 (61%)
Frame = +1
Query: 133 KYDNILMEESAQILEIETFIPLLLQNPQDGRSRLKRWIMIGDHHQLPPVVKNMAFQK 303
K+D +++E++QI +P+ L Q ++++++GDH+QLPP+VKN K
Sbjct: 1059 KFDYCIIDEASQIP-----LPICLGPLQ----LAEKFVLVGDHYQLPPLVKNSRTSK 1106
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.42
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Frame = +3
Query: 138 RQHTDGGISSNPRDRDVHTAA---AAESAGRQVP----AEALDHDRRPPPAAPGRQEHGV 296
R + G I P+ R +A S GRQ P + A+ + PPPA PGR +
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403
Query: 297 P 299
P
Sbjct: 404 P 404
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +3
Query: 159 ISSNPRDRDVHTAAAAESAGR-QVPAEALDHDRRPPPAAPGRQEHGVPEV 305
+S NP + R A A + R PPP P R+ G P +
Sbjct: 278 VSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPI 327
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 27.1 bits (57), Expect = 2.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 244 IMIGDHHQLPPVVKNMAFQKYCNMEQS 324
++ GD QLPPV +N K+C Q+
Sbjct: 450 VLTGDFFQLPPVPENGKESKFCFESQT 476
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 327 VHQNGQTGCSVRGTGRTGSS*TQHLQPVPLA 419
V Q G G + G+ T SS +QPVPLA
Sbjct: 654 VQQRGNVGVTTTGSILTQSSPALPVQPVPLA 684
>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = +1
Query: 163 AQILEIETFIPLLLQNPQDGRSRLKRWIMIGDH 261
+Q+ +E+FI L + +GR + + ++ DH
Sbjct: 106 SQLARLESFIMTLKNSDPEGRDEMLKSVVFSDH 138
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.4 bits (53), Expect = 6.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 365 NWTHRVELDPA-SATCTAGATGRWATCAT*RSSRSTAPPTRACD 493
+W+ E+DP+ +A+ T +T AT + SS S+ A D
Sbjct: 955 SWSSSSEVDPSTAASATGSSTSSIATASVSGSSTSSVATASATD 998
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,807
Number of Sequences: 5004
Number of extensions: 50712
Number of successful extensions: 144
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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