Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120078.Seq
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    91   1e-19
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    89   3e-19
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    24   0.71 
SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces...    26   2.6  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   6.1  

>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 90.6 bits (215), Expect = 1e-19
 Identities = 43/82 (52%), Positives = 48/82 (58%)
 Frame = +1

Query: 4   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 183
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 184 FHFRKNKNFCPVLNLDKLWTLV 249
           FH  KN  + P +NLD+LWTLV
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLV 82



 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/64 (25%), Positives = 22/64 (34%)
 Frame = +3

Query: 255 QTRLKYASAPDGKVPVINIVKAXXXXXXXXXXXPKQPVIVXXXXXXXXXXXXXXDVGGAC 434
           +TR KY        PVIN++++           P  PVI+                GG  
Sbjct: 85  ETREKYLGKNTEVAPVINVLQSGYGKVLGKGRLPDTPVIIQTRYVSRRAEEKIKQAGGVV 144

Query: 435 VLSA 446
            L A
Sbjct: 145 ELIA 148


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 89.0 bits (211), Expect = 3e-19
 Identities = 42/82 (51%), Positives = 48/82 (58%)
 Frame = +1

Query: 4   MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 183
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 184 FHFRKNKNFCPVLNLDKLWTLV 249
           FH  KN  + P +NLD+LWTL+
Sbjct: 61  FHLMKNPLWRPTVNLDRLWTLL 82


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.2 bits (50), Expect(2) = 0.71
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +1

Query: 211 CPVLNLDKLWTLVSD 255
           C +L++D++W +VSD
Sbjct: 776 CKLLSVDQIWAVVSD 790



 Score = 22.2 bits (45), Expect(2) = 0.71
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +1

Query: 148 HPGYFGKLGMRNFHFRKNKNFCPVLNLDKL 237
           HP YF  L    F     ++ C +L+  K+
Sbjct: 741 HPPYFDDLATTTFSSLLKRDECTILSFFKI 770


>SPAC1782.11 |met14||adenylyl-sulfate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 325 YPALTILMTGTLPSGADAYFSLVCQRLMSKAYLSSKLDRNSCSF 194
           +P +TI MTG   SG       + Q L+ +   + +LD ++  F
Sbjct: 23  HPGMTIWMTGLSASGKSTIACALEQYLLQRGVTTYRLDGDNVRF 66


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 314 DNIDDGDLAIWSRCILQPRLS 252
           DN+D+ DLA +S+ I +P L+
Sbjct: 2   DNLDEDDLAFFSKPIKKPPLN 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,765,094
Number of Sequences: 5004
Number of extensions: 33292
Number of successful extensions: 76
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)