Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120068.Seq
         (804 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    31   0.19 
SPBC18E5.13 ||SPBC23G7.03|translation initiation factor |Schizos...    29   0.58 
SPAC1071.09c |||DNAJ domain protein, DNAJC9 family|Schizosacchar...    27   3.1  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   4.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.1  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.5  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    26   7.2  

>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 247 PHQRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNS 417
           PHQ   ++  +LP++          IA  +  NK     R  +PS+ N  +V+N  S
Sbjct: 493 PHQDLAIASSLLPLYTNIGGAIGAAIASPIFSNKVPKYLREYLPSSINDTQVYNFYS 549


>SPBC18E5.13 ||SPBC23G7.03|translation initiation factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 430 EQLIFHLIYNNEEAVNVICDNLKYTEVSQAARNGYTQRLRNYK--KHSRHHKPEHVLFA 600
           E +++ +   NE     IC  + YTE+S+  R   + RLR  +  KH    +  +VLF+
Sbjct: 91  ETVLYKVADPNENNKYPICSIISYTELSK-LRENQSSRLREAEKSKHKNKTRTRYVLFS 148


>SPAC1071.09c |||DNAJ domain protein, DNAJC9
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 24/85 (28%), Positives = 35/85 (41%)
 Frame = +2

Query: 545 YATTRSILDTTNPNTFCSRVSRDELRFFDVTNARTHRGGVGDQLFNNYSGFLQNLIRRAV 724
           Y   +  +D       C  +S DE RF  V N     G +    +  ++   +   RRA 
Sbjct: 150 YEKGKGSMDVILEEVMCCEIS-DEDRFRQVINNAIKDGKISK--YKRFAPNEKKRKRRAK 206

Query: 725 APEYLQIDTEELSLEIAPRV*LTKR 799
           A E    + EELS+E+     L KR
Sbjct: 207 AAEREAQEAEELSMELGLDENLKKR 231


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 244  PPHQRFKMSKMVLPIFDEDDNQFKMTIARHLVGNKER 354
            P H  F  +  ++ +F+++ N+   +IA H V N ++
Sbjct: 1741 PIHTNFDTNADIITLFEKEANEHPSSIALHFVYNVDK 1777


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +1

Query: 445  HLIYNNEEAV--NVICDNLKYTEVSQAARNGYTQRLRNYKKHSRHHKPEH 588
            +L+ N++E V    + +N K   +   A +G+  +LRN K  S HHKP +
Sbjct: 1387 NLVNNHKEHVLERAMSENNK---MDNEAMDGFLDKLRNVKLES-HHKPRN 1432


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/52 (23%), Positives = 24/52 (46%)
 Frame = +2

Query: 617  LRFFDVTNARTHRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELSLEI 772
            L FF+  +    RGG+    F  ++  +QN     +A  + + D  +L  ++
Sbjct: 3826 LNFFETCSDSNERGGLESLFFKTHASNIQNFCTEVLANTHCEEDCLKLLYDL 3877


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +2

Query: 101 MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 214
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = -3

Query: 652 MRSGVGHVEK--TQFVARHTRTKRVRVCGV*NASCSCVNAVYNRC 524
           MR G+  ++K  T F     RT   + CG+ +   SC+    NRC
Sbjct: 256 MRRGLLEMQKFATTFFDSDPRTMVEQSCGIADLVTSCLGGRNNRC 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,294,251
Number of Sequences: 5004
Number of extensions: 67718
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)