Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120066.Seq
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    30   0.44 
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.8  
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po...    27   2.4  
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    27   4.1  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    26   5.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   5.5  
SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|...    26   7.2  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    26   7.2  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   7.2  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   7.2  
SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomy...    25   9.6  
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe...    25   9.6  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 16/69 (23%), Positives = 32/69 (46%)
 Frame = +1

Query: 262  AFIHNRFHPLVTNFTNKMEFVVTETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLSRE 441
            AF H  F  ++ +  N +E      N   +   P+L T+    L   +D P ++++  + 
Sbjct: 1380 AFDHQSFKDIIVHVAN-LELYYRALN-FYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKS 1437

Query: 442  FDTEALVNF 468
             +T  ++NF
Sbjct: 1438 ENTPLILNF 1446


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
 Frame = -1

Query: 476 SFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTTN--SILLV 303
           S S  +++SV +    I +  GLS ++ +  +  +  +G+P   +S VSVT N  ++   
Sbjct: 177 SSSSSSQSSVVSVNSEIFSYFGLSQQYVNYSTSRLCVVGTPRANMSTVSVTNNGSAVSNY 236

Query: 302 KLVTSGW---NLLCI 267
            + T+GW   N  C+
Sbjct: 237 TVNTNGWTSSNFKCV 251


>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
 Frame = -1

Query: 551 TRNQSARRVFALRGANVLAIRTLQLSFSKFTKASVSNSRLSIL-----TIDGLSTEHNST 387
           +R+ SA  V +   A V  + + + + S  T  + S+  L+ L     T+   ST     
Sbjct: 156 SRSSSAHSVKSTSSATVTNVTSKKEAISATTSLAQSSPNLASLSKQPSTVHAPSTRQRDL 215

Query: 386 PSFSVNKMGSPGMLVSLVSVTTNS 315
            S  ++   SP   VS  S+TTN+
Sbjct: 216 KSSILSLYASPRPQVSSSSITTNA 239


>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 354 GNACVISFSDHKLHFVSKISNK 289
           G+AC +S  + K+H ++ ISN+
Sbjct: 230 GSACAVSDDEGKIHVINDISNE 251


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 569 YDMDLSDFSITEVEATQYLTLLLIVEHAYLHYYI 670
           YD D+S FS+  + A + + L L  E  Y +YY+
Sbjct: 185 YDPDMSKFSLGRISACREIWLAL--ECGYRYYYM 216


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 653  YLHYYIFKNYGVFEYCKSLTDHSLFTN 733
            +L  Y+ K YG+  YC  L ++SL  N
Sbjct: 2483 HLLVYLSKTYGLHHYCILLLENSLQNN 2509


>SPAC8F11.05c |mug130||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = +1

Query: 262 AFIHNRFHPLV---TNFTNKMEFVVTETNDTS 348
           AFI N++ PLV   T++TN     V +TN  S
Sbjct: 112 AFIENKYSPLVFHATSWTNGFSIDVQKTNPIS 143


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 357 SGNACVISFSDHKLHFVSKISNKW 286
           SGN   +S  D+K++   +  NKW
Sbjct: 266 SGNILAVSCGDNKVYLFKESQNKW 289


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 500  LAIRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTP 384
            L I+  QLSFS+    S + SRL  +T+   +     TP
Sbjct: 889  LIIKEEQLSFSRLQLLSRATSRLRTMTLSVFNNSGTLTP 927


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -3

Query: 186 ISRVLSIAMYLLSANLIFRVS*LSKLLRFFKSNSANS*VFWIFSSLFTISVTVRTLLHLT 7
           + R+LSIA +LLS + + R+    +    +  N+  S V   +    T SV V+  L + 
Sbjct: 14  LKRILSIAFFLLSLSTLLRIVNAQQ----YVDNNIGSMVLSDYDFAETPSVRVQRALEIL 69

Query: 6   RF 1
           R+
Sbjct: 70  RY 71


>SPBC428.05c |arg12||argininosuccinate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 317 SILLVKLVTSGWNLLCIKANV 255
           S +L  L+  GW ++C  ANV
Sbjct: 19  SCILAWLIEEGWEVICYMANV 39


>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 445 DTEALVNFENDN--CNVRIAKTFAPLSAK 525
           D +AL+NFEND+     R  + F P+ A+
Sbjct: 48  DKDALLNFENDSEAEQTRFEQNFPPIDAE 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,259,003
Number of Sequences: 5004
Number of extensions: 66135
Number of successful extensions: 218
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)