Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120047.Seq
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    29   0.59 
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch...    28   1.4  
SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.2  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    26   7.3  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    25   9.6  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   9.6  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 19/91 (20%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
 Frame = +3

Query: 282 ECNV--KAVDSACMRCRRSFAVYPAVTYLHCGHSCLCTDCDETVNVDNTCPKCKSGIRYK 455
           +CN+  + ++S  +R    F    ++ +L C  S   T+  + + ++  C KCK  +R++
Sbjct: 179 KCNLCYECIESDELRANCPFTDCNSINHLTCLASSFLTEECQVLPIEGMCTKCKRVLRWR 238

Query: 456 LKYKTL*HVALRNGDFRVVYLSPAQILNLNL 548
               T+   +L   +      +  +I++L L
Sbjct: 239 EFLSTVFTTSLETDERDFESENRIEIIDLEL 269


>SPAC1556.03 |azr1||serine/threonine protein phosphatase
           Azr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +3

Query: 432 CKSGIRYKLKYKTL*HVALRNGDFRVVYLSPAQILNLNLPLAYQKSV 572
           C +G  + L       + LRNG   + Y SPAQ+L  N+P  YQ ++
Sbjct: 137 CGNGKLHSLNLGDSGFLILRNG--AIHYASPAQVLQFNMP--YQLAI 179


>SPAC23A1.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
 Frame = +3

Query: 276 NTECNVKAVDSACMRCRRSFAVYPAVTYLH---CGHS-CLCTDCDETVNVDN-TCPKCKS 440
           + E  V      CM C +      A+T  +   CGH+ C          V+N +CP CK 
Sbjct: 180 SAETTVPQECGLCMMCVQRGDERVAITTPYTTDCGHTYCYACIMSRLKLVNNVSCPICKH 239

Query: 441 GIRYKLKYKTL 473
            IR+ L  +T+
Sbjct: 240 RIRFALPDQTM 250


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 458  QFISNAAFTFRTRIVHVYRFVAIGAQTRMSAMQI 357
            Q++SN +   RT ++ +   V+   +T+MSA Q+
Sbjct: 996  QYLSNMSHEIRTPLIGITGMVSFLLETQMSAEQL 1029


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 733 LERRLMVVMWHTRHFNVLCK 792
           +ER++     H R FN+LCK
Sbjct: 474 MERKISDAFQHGRFFNILCK 493


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
 Frame = +3

Query: 501 FRVVYLSPAQILNLNLPLAYQKSVLFASNSAKVNERIRRLARXXXXXXXS-----YFYHK 665
           F+ ++LSP+  L L L +AY  ++         NE++  L R       S       + K
Sbjct: 546 FKYLHLSPSNRLQLWLKVAYCSALADLYELLMCNEKMSNLLRRVLKIMSSNDNIDELFLK 605

Query: 666 QFIKINFLTKKIINVYNK 719
           + + IN L + + + Y++
Sbjct: 606 KCLNINLLLQHLSSEYSQ 623


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,930
Number of Sequences: 5004
Number of extensions: 56980
Number of successful extensions: 138
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)