Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV021126
         (877 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   3.5  
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce...    27   4.6  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    26   6.1  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   8.1  

>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = -1

Query: 565 ILLHNYVYCIERLNKKGKSNSYANVLAHYKRTIIVV 458
           + L+++VYCIERL  +  S SY ++++ +   +I++
Sbjct: 444 VSLNHFVYCIERL--QIVSPSYEDIISLWSSLMIII 477


>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 663

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 860 SSTPLDVRAHVTVTRT*ITSVDDLPVLHDYFLKRTAHFTYSLPRWI 723
           S+TP D   H  + RT     ++L  +   F+K      Y +P+++
Sbjct: 615 STTPFDCYGHNVLIRTPSKFSENLWAVRSLFIKTAEGLGYDIPKYL 660


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 451 NDDQSNKTRMNVKIAGLAGDG 389
           ND+ +NKTR  V  AG +G+G
Sbjct: 225 NDNTANKTRGAVSSAGYSGEG 245


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 586  AKSSAIFILLHNYVYCIERLNKKGKSNS 503
            +K S +F ++ N  +C   L ++GKSNS
Sbjct: 3878 SKISTLFFMVANNGFCSPDLPQEGKSNS 3905


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,314
Number of Sequences: 5004
Number of extensions: 65949
Number of successful extensions: 132
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)