Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0111
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    27   2.7  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    26   6.2  

>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -1

Query: 259 KCAYSSADRSVYKFITFYNTNRTIFLKKKMEFSLPKTIL 143
           KC Y + D   Y F+   N   TI   K  E  L   IL
Sbjct: 212 KCHYETIDEKDYSFVKMINFAETIIANKSNEGYLLSRIL 250


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 333 SLILRWSTESAVRTTQPILTYSGVRNALI 247
           +LIL WS+E A R  +    Y  +  ALI
Sbjct: 137 TLILAWSSEEAARYLETYKAYENMSPALI 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,917
Number of Sequences: 5004
Number of extensions: 53194
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)