Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0110
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    24   6.4  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    24   6.4  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    24   6.4  
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po...    24   8.5  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -3

Query: 278 KLWNTR*RLWLDLPQHSLLRGGAP*RKCSRSAGAPISAVR 159
           K W    + W + P   L R  A   K ++ A  P+ A+R
Sbjct: 16  KDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEAIR 55


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 91  PVLAEWVGRDRGSLTSGYLCRL 26
           P   +W+ RDR  L++G+ C L
Sbjct: 55  PAHPKWLNRDRFILSNGHACVL 76


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 276 ALEHTLTSLVGPATAQSPTRRRTLAQVQPERGGSNIGS 163
           +L H   S   P   ++P  + T   + PE  GS IGS
Sbjct: 329 SLYHGAVSADVPEQTEAPISK-TAGSINPEDSGSEIGS 365


>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 434

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 130 DPSAGLRTVEAICPVLAE-WVGRD 62
           DPSA L  ++ I PV+AE W  RD
Sbjct: 141 DPSAMLSYLKKIDPVMAEQWHPRD 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,439,924
Number of Sequences: 5004
Number of extensions: 24059
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)