Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0098
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    28   1.4  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   2.5  
SPAC222.06 |mak16||nuclear HMG-like acidic protein Mak16|Schizos...    27   3.3  
SPBC146.11c |mug97|meu33|meiotically upregulated gene Mug97|Schi...    26   4.4  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    26   5.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   5.8  
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc...    26   5.8  
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos...    26   5.8  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    26   5.8  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    26   5.8  
SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.8  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   5.8  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   7.7  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.7  
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce...    25   7.7  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   7.7  

>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/87 (24%), Positives = 37/87 (42%)
 Frame = -2

Query: 276 SAVREVFIHWTRHSWTLVLRYTSSIFVSQISYFAGTSIFALLLIN*LAEDDIIFFDALLR 97
           S + ++F++  RHSW+  + Y   I V+  S  +    F         +   + +D  ++
Sbjct: 424 SGLMDIFVYLWRHSWSNGIDYAKWISVALPSMLSNKVFFKAFKD---FDAWKVVYDDFIK 480

Query: 96  SA*TLKAGAFFVFWTSSCTEDDDVDER 16
               LK    F  +  S  E+D  DER
Sbjct: 481 CNDDLKGDKSFNDYILSTNEEDGEDER 507


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 147 IN*LAEDDIIFFDALLRSA*TLKAGAFFVFWTSSCTEDDDV 25
           IN       +  DA + +A T K G F  F++S C + DDV
Sbjct: 276 INPTGTSKALALDADIDAALTDKEGWFIQFYSSECDDCDDV 316


>SPAC222.06 |mak16||nuclear HMG-like acidic protein
           Mak16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 6   RSVSVRQHHRPLYSYLSRKRRTHLPSRFMQ 95
           R  +VR+ +  LY Y+    R H PS+  Q
Sbjct: 49  RYATVREDNGKLYLYMKTIERAHFPSKLWQ 78


>SPBC146.11c |mug97|meu33|meiotically upregulated gene
          Mug97|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 24 QHHRPLYSYLSRKRRTHLPSR 86
          Q H+PL   LS K  TH+P R
Sbjct: 35 QLHKPLTRNLSNKEDTHVPKR 55


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -3

Query: 215 IQVPFSSLRYP-ILQAHPYSHFSSSTNWQKMISFFSMHF*GLH 90
           +Q+  + L +P      PYS   S   W+ + S F+ +F  +H
Sbjct: 231 LQLAAALLAFPEFTNGSPYSLLLSDDRWEYLASLFTSNFTAVH 273


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
 Frame = +2

Query: 275  LRACVVRRTAQSWASCL-----NVKRNRQSCAS 358
            +RAC+V+   Q WA CL      + R+ Q C S
Sbjct: 2057 VRACIVQGFQQIWACCLWYWGSYIDRSMQECHS 2089


>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 849

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 321 QLAQLCAVLLTTHALSAVREVFIHWTRHSWTLVLRYTSSI 202
           QL + C V   TH L A RE+ IH+ +    +VL   +S+
Sbjct: 359 QLTKACGV---THKLRAFRELLIHFPKWRGHVVLIQITSL 395


>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -2

Query: 591 SQSLSSTQVPLS-ALRNPLLQTQPTSQGSSE 502
           +QSLSS ++PL  ++R+PL Q    ++  S+
Sbjct: 736 NQSLSSERIPLDPSMRSPLQQQSSENESKSQ 766


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/52 (26%), Positives = 21/52 (40%)
 Frame = -3

Query: 674 PPGLNTSRPDKQLGCNLNTVHLLNKAGIHNLFHRHRCHCQPYEILFYKHNRL 519
           PP   +S      G    T +      ++ +FH+H+  C  Y I  Y   RL
Sbjct: 293 PPNQESSSSASSYGSRTQTPNA-RSCSLNIVFHKHKKVCTYYMIRHYAKRRL 343


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 166 GCACKIGYLRDENGTCIP 219
           G   KIGY  DE+G C+P
Sbjct: 111 GVYLKIGYEMDESGFCLP 128


>SPAC7D4.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 96

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 209 VPFSSLRYPILQAHPYSHFSSSTNW 135
           VPFS++  PI     Y+ F S+T+W
Sbjct: 56  VPFSAINLPIRFLIFYNAFRSNTSW 80


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -2

Query: 609 TEQSWDSQSLSSTQVPLSALRNPLLQTQPTSQGSSEGHDCDLYLYSHLSELQLGCRQLEY 430
           + +S  + S  S+ +   + +NP       SQ S+E        YS+++ LQ      + 
Sbjct: 226 SSESTIANSDQSSFITYESTQNPTANKTDASQQSTESTSSSASAYSYITTLQTATTAQQT 285

Query: 429 TSFTGHSS 406
           TS   +S+
Sbjct: 286 TSENTYST 293


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 81  KAGAFFVFWTSSCTEDDDVDE 19
           +A A+ +F+T++  EDDDV E
Sbjct: 413 QATAYVLFYTAADEEDDDVSE 433


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
 Frame = -2

Query: 330 TFRQLAQLCAV--LLTTHALSAVREVFIHWTRHSWTLVLRYTSSIFVSQISYFAGTSIFA 157
           T   L  +C +    +     A  E+F +W    +   L Y  S F++   YF  T I  
Sbjct: 106 TVGMLINVCVITSFASVDIYRAKDEIFANWVDMDYYEKLSYIGSAFITPALYFTLTLILF 165

Query: 156 L 154
           L
Sbjct: 166 L 166


>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
 Frame = -3

Query: 446 VDSSSTLRSRDIVPV-PFFDLKK--PPSQTQPG-----SHSSVDCVLHSDNLPSSVQFS* 291
           VD SS   + +I PV PF  L K  P S  +P      S S +D   H+DN  +  + S 
Sbjct: 261 VDLSSPETAPNISPVSPFAQLVKLEPTSPQKPSFALDSSFSHLDVCRHTDNQKAFAKLSS 320

Query: 290 RHMPLAQFVKYS 255
               +++F K+S
Sbjct: 321 PAEYVSEFEKFS 332


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 252 HWTRHSWTLVLRYTSSIFVS 193
           HW+ H W   L+   SI VS
Sbjct: 886 HWSEHIWLTTLKKPQSIHVS 905


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,090,280
Number of Sequences: 5004
Number of extensions: 70549
Number of successful extensions: 223
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)