Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0079
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz... 75 1e-14
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 65 8e-12
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 56 4e-09
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.87
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 2.0
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 27 2.0
SPCC1442.09 |trp3||anthranilate synthase component I|Schizosacch... 27 2.6
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce... 26 4.6
SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27 |Schizo... 26 6.1
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 25 8.1
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 25 8.1
>SPCC553.07c |mug40||DinB translesion DNA repair
polymerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 74.9 bits (176), Expect = 1e-14
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 5/158 (3%)
Frame = +3
Query: 198 IIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKVCP 377
I+H+D D FYA +E ++NP+L+ +P+ + K+++ T+NY AR +GV M A K+CP
Sbjct: 132 IVHVDCDAFYASIEELKNPKLKSLPMAV-GKSVLCTANYVARKFGVRSAMPEFIARKICP 190
Query: 378 NLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTS---LVEEKLKNANLN 548
+L +V +L Y S ++ VL + + +DE ++++TS L E N+
Sbjct: 191 DL-VVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDEFYMNLTSHLRLQELAFTVENIT 249
Query: 549 DLI--VMGQLYSEPSAECPCGCHNRLKIASQIANEMRK 656
++ + Q++ E CG K+ ++IA+ RK
Sbjct: 250 MVVEKIRKQVHEETGVTVSCGIAAN-KLLAKIASNKRK 286
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 65.3 bits (152), Expect = 8e-12
Identities = 37/111 (33%), Positives = 63/111 (56%), Gaps = 4/111 (3%)
Frame = +3
Query: 198 IIHIDLDCFYAQVEMVRNPELRDVPLGIQQ--KNIVVTS-NYEARNYGVSKCMLVTDALK 368
++H+D DCF+A V + ELR P+ + KN + S NYEAR +G+ M V A
Sbjct: 279 LLHVDFDCFFASVSTRFSHELRLKPVAVAHGIKNSEIASCNYEARKFGIKNGMYVGTAKN 338
Query: 369 VCPNLKLVNGEDLHSYRTASGKVFLVL-QGWRCPVEKLGMDENFIDVTSLV 518
+CP+L++V+ D +Y + S + + +L ++ + +DE +D+TS V
Sbjct: 339 LCPSLRVVD-YDFGAYESVSREFYTILVNTLHDYIKVISIDEALLDITSSV 388
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 56.4 bits (130), Expect = 4e-09
Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 22/130 (16%)
Frame = +3
Query: 198 IIHIDLDCFYAQVEMVRNPELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKVCP 377
+ HID D FYAQVE VR VPL +QQ ++ NY AR +S+ VT+A K CP
Sbjct: 29 VAHIDQDAFYAQVESVRLGLDHSVPLAVQQWQGLIAVNYAARAANISRHETVTEAKKKCP 88
Query: 378 NLKLVN------GED----------------LHSYRTASGKVFLVLQGWRCPVEKLGMDE 491
L + GE L YR S K+ +++ V+K +DE
Sbjct: 89 ELCTAHVKTWKAGESEAKYHENPNPNYYKTCLDPYRHESVKILNIIKKHAPVVKKASIDE 148
Query: 492 NFIDVTSLVE 521
FI++TS V+
Sbjct: 149 CFIELTSDVK 158
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 0.87
Identities = 35/143 (24%), Positives = 54/143 (37%)
Frame = -2
Query: 523 SSTRLVTSMKFSSIPSFSTGHRQPCNTKNTLPDAVL*LCKSSPFTSFKFGQTLSASVTSI 344
SST +S+ SSIPS S+ ++ ++ + SS + + S+S TS
Sbjct: 227 SSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTST 286
Query: 343 HXXXXXXXXXXXLVTTMFFCWIPSGTSRSSGFRTISTCA*KQSKSICIMLLKCSPSISLQ 164
T+ S +S SS T+S+ + S S S +IS
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSS 346
Query: 163 VEQLDSMFLSSMFVSLKAVISFA 95
S SS S K+ SF+
Sbjct: 347 SSSPSSSSFSSTTSSSKSSSSFS 369
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/82 (30%), Positives = 37/82 (45%)
Frame = +3
Query: 369 VCPNLKLVNGEDLHSYRTASGKVFLVLQGWRCPVEKLGMDENFIDVTSLVEEKLKNANLN 548
V P + + E+L Y+ S KV L G R +E +E+ + S + K++NA
Sbjct: 323 VRPKKRNILTEELEKYKK-SKKVVL---GKRKNLEN--DEESTLRALSSFQSKIRNAEDE 376
Query: 549 DLIVMGQLYSEPSAECPCGCHN 614
D VM Y + PC HN
Sbjct: 377 D--VMDSQYGSKIEDTPCSLHN 396
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 586 LGSLYSWPITMRSFKFAFFNFSSTRLVTSMKFSSIPSFSTGHRQPCNTKNTLPD 425
+ + +S T++S + FN + T + S++ FSTG + N N L D
Sbjct: 166 ISTQWSGSATLKSSNRSIFNIGLGYINTFLGVSNVRGFSTGSGRSKNVLNKLDD 219
>SPCC1442.09 |trp3||anthranilate synthase component
I|Schizosaccharomyces pombe|chr 3|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +3
Query: 252 PELRDVPLGIQQKNIVVTSNYEARNYGVSKCMLVTDALKVCPNLKLVNGEDLHSY 416
PE + V LG + K+ V Y+A + + + D + P+ ++ DLH +
Sbjct: 195 PEQKKVHLGYEAKSNVGEDGYKAFVSNLKEHIFNGDIFQAVPSQRIARRTDLHPF 249
>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 563
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -1
Query: 212 INMYNALEMFTINLVTSGTARFHVSVVHVRIIESCNKFCFL*FVYLCYL 66
IN + I+L + TAR HVSV++ I++ C L + YL
Sbjct: 312 INFFKKRGSKLISLELTDTARIHVSVINA-IVDCCPNLISLNLSRIFYL 359
>SPBC337.04 |ppk27||serine/threonine protein kinase Ppk27
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 413
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 480 QVFQRDTANLATLKTPCLMQFCNY 409
+VF+++ L TL PC++Q NY
Sbjct: 150 KVFRQEIWALKTLSHPCVVQLLNY 173
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +3
Query: 483 MDENFID--VTSLVEEKLKNANLNDLIVMGQLYSEPSAE 593
+DENFI+ + ++E K N ++ L ++Y EPS+E
Sbjct: 333 IDENFIEKNLLEIIEAKKLNGKVDSL--QKRVYIEPSSE 369
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 522 EKLKNANLNDLIVMGQLYSEPSAECPCGCHNRLKIASQIANEMRKKIYDE 671
E L NAN++D + +LY E + P +R + N + Y E
Sbjct: 61 EDLANANMSDPYMQAKLYKELADNFPEAIISRYETQGVARNSACDRYYQE 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,662
Number of Sequences: 5004
Number of extensions: 62241
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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