Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0068
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      25   3.8  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   3.8  
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    25   6.6  
SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr 1|...    24   8.7  

>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 113 PNLISPKKYTNPNTLWQLF*YIFLPN 36
           P L+S  K T+P+++W +  ++FL N
Sbjct: 159 PILMSLTKSTSPDSVWAIAVWLFLAN 184


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 329 RVLSEILGPIWVKTLRYHFNNVEN 258
           +++++   P W K+  YHF ++EN
Sbjct: 373 QLITKTKNPKWSKSHEYHFKDLEN 396


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 216 FIHSSCICSMQ-LSLRNPKL 160
           F H S ICSMQ L    PKL
Sbjct: 291 FYHGSSICSMQNLDFSQPKL 310


>SPAC17G6.12 |cul1|pcu1|cullin 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 767

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -3

Query: 124 ICPNRILFHLRNTLIPI--PFGNYF 56
           + PN + FHL   L+P+   F NY+
Sbjct: 541 LSPNNVNFHLPEELVPLYEGFQNYY 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,704
Number of Sequences: 5004
Number of extensions: 32725
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)