Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0062
(509 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub... 29 0.40
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 0.71
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 1.2
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 27 2.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 2.9
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 2.9
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 26 3.8
SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator ... 26 3.8
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 5.0
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 25 5.0
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 6.6
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 6.6
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 25 8.7
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha... 25 8.7
>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 214
Score = 29.1 bits (62), Expect = 0.40
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 251 KKSPPRELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQP 391
+K +E + PP + TEP + + K A+E + PPK ++ +P
Sbjct: 87 EKEEKKETIQPPEEVKTEPP--QPEEKEGKEAKEPEEPPK-EEAEEP 130
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 0.71
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 363 RLNTNRQVSRCGQHGLRKIAKVCP 434
R T R+ S CGQ G K K+CP
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICP 963
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.5 bits (58), Expect = 1.2
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = +2
Query: 287 RDANTEPEWVRRSN---EMQKGAREVDSPPKYQQTSQPVWSTRPSE 415
+D + E + V N E++KG +EVD P + T+ P+ + E
Sbjct: 280 KDKDQEQDTVSDKNQIDEIEKGQKEVDEEPVSEPTTSPILPPKNQE 325
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +2
Query: 314 VRRSNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKSLPKDSASNVQGS 463
V R + K + E +Y Q ++P+ ++ S++ S+PK S GS
Sbjct: 303 VLRKIQQLKDSYEQSLYEEYPQFAEPISVSQSSDSSSSIPKKSNDEAGGS 352
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 2.9
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = +2
Query: 380 TSQPVWSTRPSENRKSLPKDSASNVQ 457
+ P W+ +P ++ +PK++ N+Q
Sbjct: 625 SGDPFWAIQPKQSSSQVPKENHHNIQ 650
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 2.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 245 DGKKSPPRELVTPPRDANTE 304
DGKKS R +V PP +A E
Sbjct: 354 DGKKSAVRRVVLPPEEAYAE 373
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 25.8 bits (54), Expect = 3.8
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 323 SNEMQKGAREVDSPPKYQQTSQPVWSTRPSENRKSLPKDSAS 448
++E++K + ++D K + Q + T P + K+LPK+SAS
Sbjct: 211 NDELKKISEKLDK--KGEAVGQALELTSPKIDNKNLPKNSAS 250
>SPAC4F10.04 |||protein phosphatase type 2A, intrinsic regulator
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 266 RELVTPPRDANTEPEWVRRSNEMQKGAREVDSPPKYQQTSQPVWS 400
+++V ++N ++ N M+KG SP Y T+ P+WS
Sbjct: 243 KKIVDEKANSNLYFSAIKFINVMKKGPFYEHSPILYDITAVPIWS 287
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 5.0
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 81 NLSPNLARSPKKKLFTLIRSPYIT 152
NLSPN+ + +L T+I P+I+
Sbjct: 299 NLSPNIKATSYDRLSTVINEPFIS 322
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 25.4 bits (53), Expect = 5.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 267 ESLLHHQGMLIQNLSGLGGVMKCKRAHVRSTVRLNTNRQVSRCGQHGLRK 416
++L H L+QNL +MK K H R+ +++ QH RK
Sbjct: 59 QALNAHDKQLLQNLQRDMAIMKKKNIHGHRVGRVESDKTKEAERQHKPRK 108
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 6.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 190 DSERENKNSSASMVPETTGW*KESTERACYTTK 288
DSE +N+N S P+T+ TE TK
Sbjct: 657 DSELDNQNQSGKSNPDTSATPSAPTESTTVATK 689
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.0 bits (52), Expect = 6.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -1
Query: 419 DFPKAVLTTPADLSVGI 369
D+P V+ TPADL GI
Sbjct: 419 DYPNMVVITPADLPEGI 435
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 24.6 bits (51), Expect = 8.7
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -2
Query: 202 LFLSLYP-RWYRLRTVGTVIYGLLINVNSFF 113
L + +P R+Y L T+G ++Y L I + S F
Sbjct: 50 LIIGSFPFRFYGLNTIGKIVYILQIFLFSLF 80
>SPAPJ696.01c |vps17||retromer complex subunit
Vps17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 549
Score = 24.6 bits (51), Expect = 8.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +2
Query: 347 REVDSPPKYQQTSQPVWSTR 406
R + +PP Q+T+Q W+ R
Sbjct: 473 RRLSNPPPSQKTNQDAWTNR 492
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,454
Number of Sequences: 5004
Number of extensions: 45455
Number of successful extensions: 137
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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