Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0056
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   242   2e-65
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   242   2e-65
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   242   2e-65
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   3.8  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   6.7  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.9  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   8.9  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  242 bits (593), Expect = 2e-65
 Identities = 110/160 (68%), Positives = 134/160 (83%)
 Frame = +3

Query: 36  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 216 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 395
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 396 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 515
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PS
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPS 159


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  242 bits (593), Expect = 2e-65
 Identities = 110/160 (68%), Positives = 134/160 (83%)
 Frame = +3

Query: 36  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 216 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 395
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 396 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 515
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PS
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPS 159


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  242 bits (593), Expect = 2e-65
 Identities = 110/160 (68%), Positives = 134/160 (83%)
 Frame = +3

Query: 36  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 215
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 216 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKM 395
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK 
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKA 119

Query: 396 GDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPS 515
           GDRG L R+SGN+  ++GH+ D  +TRVKLPSGAKKV+PS
Sbjct: 120 GDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPS 159


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 406 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 308
           P++P+F SR H   P G+  T   FP     F+
Sbjct: 11  PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 57  QRKGAGSVFVSHTKKRKGAPKLRSLD 134
           +R+G+     +HTK+ K APK    D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 253  RSSSLLPKGSTQANLFIVE 309
            +S+++LP GST   LF++E
Sbjct: 1353 KSNAILPHGSTSDKLFLLE 1371


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 499 LAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPI 392
           +AP  + T+ ++A+GLC   +      RA  PL PI
Sbjct: 116 IAPLSANTMAKMANGLCDNLLTSL--IRAWAPLKPI 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,216,775
Number of Sequences: 5004
Number of extensions: 46017
Number of successful extensions: 131
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)