Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0052
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   2.6  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   3.5  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   3.5  
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    26   4.6  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    26   6.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.1  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   6.1  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    25   8.0  
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe...    25   8.0  

>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 589 VQSHTLIPAPHGTYHNPNVPNYH 657
           ++ H+ +P P+    NP +PN++
Sbjct: 385 LEVHSTVPEPNDAIENPEIPNWY 407


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 544 NPNNYQSPSSLEHPPVQSHTLIPAPHGTY 630
           NPN+  SP+   +PP  S+  IP  +  Y
Sbjct: 148 NPNSNNSPTFYSNPPALSNIPIPLNNSPY 176


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +1

Query: 529 SVDRYNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVPNYHSRASTET 678
           S+ R +P  Y  P+S E  P+++ + + AP    H+  +    S + ++T
Sbjct: 225 SIQRLSPQPYVRPTSDER-PIETDSSVSAPKVANHDEELKQGKSTSPSDT 273


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 152 GYICRLWHANVASLV 108
           GY C++W AN  SL+
Sbjct: 252 GYSCKIWDANTGSLI 266


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
 Frame = +1

Query: 499 MSPS*KGLEESVD-RYNPNNYQSPS-----SLEHPPVQS-HTLIPAPHGTYHNPNVPNYH 657
           M+P    LE  ++ + NP    SP+     S   P +   ++  P+P G   NP +PN  
Sbjct: 90  MAPENNRLEVGLNTKINPLKGSSPALNADFSANKPWISEVNSFSPSPIGATENPTIPN-- 147

Query: 658 SRASTETREQATYKQP 705
           S  + +T + A+   P
Sbjct: 148 SEQTVDTLDAASSSAP 163


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = +1

Query: 541 YNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVPNYHSRASTETREQA 690
           Y   + Q+P     PPV++  L P P  T  N  V N ++  S      A
Sbjct: 27  YVNESAQNPQPQWEPPVENLKLAPPPGATSVNTAVYNNNNNTSAANTNAA 76


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/56 (25%), Positives = 23/56 (41%)
 Frame = +1

Query: 517 GLEESVDRYNPNNYQSPSSLEHPPVQSHTLIPAPHGTYHNPNVPNYHSRASTETRE 684
           G+     R   N+  S  + +  P+Q+  L P P  T  N  +P   S  +   +E
Sbjct: 448 GVTRRAARTRANSASSVFNSQLQPLQTDLLSPLPSPTSSNSRLPRVRSACTLNVQE 503


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/26 (57%), Positives = 15/26 (57%)
 Frame = -1

Query: 550 LGYIYLLTPLVLSRMGSFLA*ELKGL 473
           LGYIY    L  S M  FLA E KGL
Sbjct: 433 LGYIYACINLFSSFMIFFLAKETKGL 458


>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 727

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 589 PAGVPDCLATDNYLGYIYLLTPLVLSRM 506
           P  VP C+ T N + + + +TP  LS++
Sbjct: 137 PFVVPACVGTRNTISFSFHVTPPALSKL 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,157
Number of Sequences: 5004
Number of extensions: 54626
Number of successful extensions: 195
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)