Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_C22
         (554 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   1.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   1.9  
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    27   1.9  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    27   2.5  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   4.3  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    25   5.7  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   5.7  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    25   7.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   7.5  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    25   9.9  

>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 266 NGMANAVDSIDHKVYLGGKDGVYTYDYTTKKATNLGITD-SSIWQMFFCPVHGLFIATYK 442
           +G  ++  S +HK+  G    V  +D  T K     +TD + IW + F  +    +A  +
Sbjct: 629 SGYISSFVSDEHKIISGNDGSVKLWDVRTGKLLRFLLTDLTKIWHVDFDAMR--CVAAVQ 686

Query: 443 PDEKSFL 463
            D++++L
Sbjct: 687 RDDQAYL 693


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 332 YTYDYTTKKATNLGITDSSIWQMFFCPV-HGLFIATYKPDEKSFLY 466
           + Y+ +T++  +L  TDS +W+  F P   G+ +   + D    +Y
Sbjct: 439 WNYEKSTEEPEHLITTDSPVWKARFTPFGDGVILMPQRGDNSVHMY 484


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 71  IVIRNNNYEKQV-LKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYG 247
           I+++  NY+  + L++D H  Y   +D+      +  SPE + + ++     +   NE+ 
Sbjct: 292 IILQGTNYDTCLELQADGH--YVRMVDFYGQPRLYIRSPEADSERIINFPEDDPYYNEFD 349

Query: 248 EIAGITNG 271
              G+  G
Sbjct: 350 AFLGVVQG 357


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 65  DVIVIRNNNYEKQVLKSDVHNPYQLAIDYQTSTIFFSLSPEVNGKTVLKSAYFN 226
           D+I     N E  +L++       LAID     +    S  V  KT L+  +FN
Sbjct: 351 DLIASITKNDENLILETSSDYQVALAIDLLDKLLELHPSKRVKAKTALQHEFFN 404


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +3

Query: 219 TSIQKQMN--MEKSPESQMAWLTLWTVSTTKFISEAKMEFTRTITLPRKLQT*VSQTLAY 392
           T I++  N  +E S E  +     W  ST  F S+ +  F+  +TL  K  T       +
Sbjct: 661 TKIEELANSDVEPSTEQNIGGDVSWGAST--FQSKPQPSFSFGLTLDDKSNTPGKNFSIF 718

Query: 393 GKCFSAQFMDFSLQHTNLTKNLSYTRTGK 479
           GK    Q      ++  LTK  S+  + K
Sbjct: 719 GKTAETQVEQKKPENNVLTKPFSFAPSDK 747


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 21/65 (32%), Positives = 28/65 (43%)
 Frame = +3

Query: 66  TLS*FGTTIMKNKFSRATCTILTN*QSTTRPAQYFSVYLPK*TVKLF*NPLTSIQKQMNM 245
           T+  F  T+MKNKF            ST    Q FS +L K   +L  +   S   Q ++
Sbjct: 291 TILPFSVTLMKNKFGNFLIQKCFE-YSTEAQLQSFSYFLKKHVKELSIDAFGSHVLQKSL 349

Query: 246 EKSPE 260
           E  PE
Sbjct: 350 EIYPE 354


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +2

Query: 134 QLAIDYQTSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEIAGITN 268
           ++++ Y ++ +F  ++ ++N   VLK  + NT+ NEY +   I N
Sbjct: 256 RMSLYYDSNELFKKMTDDLN--YVLKFPFDNTRGNEYEKEQKIRN 298


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 133 VRIVHVALENLFFIIVVPNYDNVTFLLISAFRE 35
           VR+   AL N F    VPNYD+V  +  + FR+
Sbjct: 290 VRLARPALINAFG---VPNYDSVVPMYTTVFRD 319


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/51 (23%), Positives = 29/51 (56%)
 Frame = +2

Query: 203  VLKSAYFNTKTNEYGEIAGITNGMANAVDSIDHKVYLGGKDGVYTYDYTTK 355
            V +  Y  ++TN+   + G++  +ANA D  +   +L  +DG++ + ++ +
Sbjct: 1278 VSRMNYVASQTNKKVRVLGLSTAVANANDLAN---WLNIRDGLFNFRHSVR 1325


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
 Frame = +2

Query: 107 LKSDVHNPYQLAIDYQ-----------TSTIFFSLSPEVNGKTVLKSAYFNTKTNEYGEI 253
           L  D H P+Q+ ++Y            TS       P+ NG TV+K+    T  N + + 
Sbjct: 242 LSDDSHGPHQVGLNYHLAKSYLDKCGITSLCMIEKGPDGNG-TVVKNV---TVDNVWSKF 297

Query: 254 AGITNGMAN 280
            G TNG+ N
Sbjct: 298 VG-TNGITN 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,126
Number of Sequences: 5004
Number of extensions: 48700
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)