Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0001_A22
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomy...    23   8.1  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    23   8.1  

>SPAPB1A10.02 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 336

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 132 DESLMSNWVCLVENESGRFTDKIG 203
           D S +    CL+ N SG  TD+ G
Sbjct: 194 DASALEKKSCLLPNSSGTLTDQRG 217


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 105 VQELRRQGF--DESLMSNWVCLVENESGRFTDKIGKVTKNG 221
           V + R++ +  DE+L    +  +  +SG F   + K+ +NG
Sbjct: 20  VSDTRKRQYQRDEALRKKIISELGKKSGNFESPVRKIRRNG 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,375
Number of Sequences: 5004
Number of extensions: 21118
Number of successful extensions: 49
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)