Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 030623sawa_A08_e57_02.seq
         (1430 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces...    77   6e-15

>SPAC890.08 |rpl31||60S ribosomal protein L31|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 113

 Score = 77.0 bits (181), Expect = 6e-15
 Identities = 41/81 (50%), Positives = 50/81 (61%)
 Frame = +1

Query: 37  GVGFKKRAPRAIKEIRRFAEKXMGTPDVRVDTRLNKYLWSKGVRNVPFXXXXXXXXXXKX 216
           GV FKKRAPRAIKEI  FA+K M T +VRVD  LNK +W +G+RNVP             
Sbjct: 27  GVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSD 86

Query: 217 DEDSAHKLFTLVTYVPVASIK 279
           ++D A  L+T V  V VA+ K
Sbjct: 87  EDDKA--LYTYVQAVDVANPK 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,783,566
Number of Sequences: 5004
Number of extensions: 61873
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 796858378
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)