Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40077
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 134 8e-32
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 126 3e-29
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 120 2e-27
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 115 5e-26
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 65 7e-11
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 48 9e-06
06_03_1142 + 27961999-27962263,27963735-27965080,27965158-279654... 29 4.4
12_02_0028 - 12437332-12437576,12438436-12438537,12438619-124390... 28 7.7
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 28 7.7
06_03_1275 + 28903961-28904123,28904225-28904322,28904406-289045... 28 7.7
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 134 bits (324), Expect = 8e-32
Identities = 71/162 (43%), Positives = 95/162 (58%), Gaps = 1/162 (0%)
Frame = +1
Query: 256 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 435
YA+S K+ FS++ K LV+QF+VKHEQ +DCGGGY+K+ ++QK GETPY IMFGP
Sbjct: 92 YAISAKYPEFSSKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGETPYSIMFGP 151
Query: 436 DICGPGTKKVHVIFSYKGKNHLIKKISAAKM-MSTHICTL*L*NLTTPMKSSLTMRKLNL 612
DICG TKKVH I + GKNHLIKK K TH+ TL + + +
Sbjct: 152 DICGYATKKVHAILTKNGKNHLIKKDVPCKTDQLTHVYTL-IIRPDAKYSILIDNTEKQT 210
Query: 613 GDLEADWGLPSA*RKSRDPESPGNPKTWG*QSPLFPDPEGQE 738
G + DW + + RDPE+ P+ W + PDPE ++
Sbjct: 211 GSIYDDWNIIPP-KNKRDPEAK-KPEDWD-DNEYIPDPEDKK 249
Score = 45.2 bits (102), Expect = 6e-05
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 DVFFEEKFPDDSWESNWVYSE--HPGKEFGKFKLTAGKFFSDPEDDKGL 232
+VFF+EKF DD WE WV SE G++ T+GK++ D DDKG+
Sbjct: 26 EVFFQEKF-DDGWEDRWVKSEWKKDDNRAGEWNHTSGKWYGD-ADDKGM 72
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 126 bits (303), Expect = 3e-29
Identities = 70/163 (42%), Positives = 97/163 (59%), Gaps = 2/163 (1%)
Frame = +1
Query: 256 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 435
YA+S ++ FSN+ K LV+QF+VKHEQ +DCGGGY+K+ ++QK G+TPY IMFGP
Sbjct: 85 YAISAEYPEFSNKDKTLVLQFSVKHEQKLDCGGGYVKLLGGDVDQKKFGGDTPYSIMFGP 144
Query: 436 DICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL*L*NLTTPMKSSLTMRKLNL 612
DICG TKKVH IF+ KNHLIKK + +H+ TL + T + K +
Sbjct: 145 DICGYSTKKVHTIFTKNDKNHLIKKDVPCETDQLSHVYTLIIHPDATYTILIDNVEKQS- 203
Query: 613 GDLEADWG-LPSA*RKSRDPESPGNPKTWG*QSPLFPDPEGQE 738
G + W LP ++ +DPE+ P+ W PDPE ++
Sbjct: 204 GSIYEHWDILPP--KQIKDPEAK-KPEDWD-DKEYIPDPEDKK 242
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/56 (53%), Positives = 39/56 (69%), Gaps = 2/56 (3%)
Frame = +2
Query: 92 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDAR 253
+VFF+EKF +D WES WV SE E G++ T+GK+ DPE DKG++TSED R
Sbjct: 30 EVFFQEKF-EDGWESRWVKSEWKKDENMAGEWNHTSGKWNGDPE-DKGIQTSEDYR 83
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 120 bits (288), Expect = 2e-27
Identities = 63/149 (42%), Positives = 89/149 (59%), Gaps = 2/149 (1%)
Frame = +1
Query: 256 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 435
+A+S K FSN+G+ LV+Q+++K EQDI+CGGGY+K+ + QK G+TPY +MFGP
Sbjct: 83 FAISAKIPEFSNKGRTLVLQYSIKFEQDIECGGGYIKLMSGYVNQKKFSGDTPYSLMFGP 142
Query: 436 DICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL*L*NLTTPMKSSLTMRKLNL 612
DICG TKK+H+I SY+G+N+ IKK + TH+ T L + R+
Sbjct: 143 DICGTQTKKLHLILSYQGQNYPIKKDLQCETDKLTHVYTFIL-RPDASYSILVDNRERES 201
Query: 613 GDLEADWG-LPSA*RKSRDPESPGNPKTW 696
G + DW LP RK +D + PK W
Sbjct: 202 GSMYTDWDILPP--RKIKDVHAK-KPKDW 227
Score = 55.6 bits (128), Expect = 4e-08
Identities = 29/56 (51%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Frame = +2
Query: 92 DVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDAR 253
+V FEE+F +D WES WV S+ E G FK TAG++ DP DDKG++T+ DAR
Sbjct: 28 EVIFEERF-EDGWESRWVKSDWKRSEGKAGTFKHTAGRYSGDP-DDKGIQTTLDAR 81
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 115 bits (276), Expect = 5e-26
Identities = 62/149 (41%), Positives = 86/149 (57%), Gaps = 2/149 (1%)
Frame = +1
Query: 256 YALSRKFKPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVFDCKLEQKDMHGETPYEIMFGP 435
+A+S KF FSN+ + LVVQ+++K EQDI+CGG Y+K+ + QK G+TPY MFGP
Sbjct: 83 FAISAKFPEFSNKNRTLVVQYSIKIEQDIECGGAYIKLMSGYVNQKKFGGDTPYSFMFGP 142
Query: 436 DICGPGTKKVHVIFSYKGKNHLIKK-ISAAKMMSTHICTL*L*NLTTPMKSSLTMRKLNL 612
DICG TKK+H+I SY+G+N+ IKK + TH T L + R+
Sbjct: 143 DICGDQTKKLHLILSYQGQNYPIKKDLKCETDKLTHFYTFIL-RPDASYSLLVDNREREF 201
Query: 613 GDLEADWG-LPSA*RKSRDPESPGNPKTW 696
G + DW LP RK ++ + PK W
Sbjct: 202 GSMYTDWDILPP--RKIKESNAK-KPKDW 227
Score = 52.8 bits (121), Expect = 3e-07
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Frame = +2
Query: 83 INCDVFFEEKFPDDSWESNWVYSEHPGKE--FGKFKLTAGKFFSDPEDDKGLKTSEDAR 253
++ +V FEE+F DD W S WV S+ E G FK TAG + DP DD+G++T+ DA+
Sbjct: 25 VSGEVIFEERF-DDDWGSRWVKSDWKKSEGKAGTFKHTAGSYSGDP-DDRGIQTTSDAK 81
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 64.9 bits (151), Expect = 7e-11
Identities = 33/85 (38%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Frame = +1
Query: 244 RCEVYALSRKF-KPFSNEGKPLVVQFTVKHEQDIDCGGGYLKVF---DCKLEQKDMHGET 411
+ + YA+ ++ +P + + +V+QF V+ + ++CGG YLK D + K+ ET
Sbjct: 69 KAKKYAIIKELDEPVTLKDGTVVLQFEVRLQNGLECGGAYLKYIRPQDAAWDAKEFDNET 128
Query: 412 PYEIMFGPDICGPGTKKVHVIFSYK 486
PY IMFGPD CG T KVH I +K
Sbjct: 129 PYTIMFGPDKCG-STNKVHFILKHK 152
Score = 33.5 bits (73), Expect = 0.21
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 528 DVYTHLYTLIVKPDNTYEVLIDNEK 602
D +H+YT I+KPDN +L+D E+
Sbjct: 173 DKLSHVYTAILKPDNEVRILVDGEE 197
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 48.0 bits (109), Expect = 9e-06
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +3
Query: 504 QKDIRCKDDVYTHLYTLIVKPDNTYEVLIDNEKVESG 614
+KD+ C+ D TH+YTLI++PD Y +LIDN + +G
Sbjct: 521 KKDVPCETDQLTHVYTLIIRPDAKYSILIDNTEKRTG 557
>06_03_1142 +
27961999-27962263,27963735-27965080,27965158-27965435,
27965706-27965737,27965830-27966236,27966373-27966858
Length = 937
Score = 29.1 bits (62), Expect = 4.4
Identities = 18/58 (31%), Positives = 33/58 (56%)
Frame = -1
Query: 522 CSGYLFDEMVLTLVTEDYVYLLGSRTTNVRAEHNLIWSLSVHVLLLQFAVKDLEVSAS 349
CSG+L L L+ ++ V ++G +++ + + + + +HV LL FA D +SAS
Sbjct: 80 CSGFLGTIEALQLMEKNVVAVIGPQSSGIGHVISHVVN-ELHVPLLSFAATDPTLSAS 136
>12_02_0028 -
12437332-12437576,12438436-12438537,12438619-12439009,
12439996-12440532
Length = 424
Score = 28.3 bits (60), Expect = 7.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 596 IVNEDFIGVVRFHNQSVQMCVDI 528
+V EDF+ + F +Q+V +C+D+
Sbjct: 353 LVEEDFVQIAEFLHQAVTICLDV 375
>11_06_0767 +
27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = -2
Query: 440 MSGPNIISYGVSPCMSFCSSLQSKTLRYPPPQSMSCSCLTVNWTTKGL 297
M GP ++ ++P S +Q + +++ +SC+CL T+KGL
Sbjct: 674 MLGPTVLV--LAPTRELASQIQDEAVKFGRSSRVSCTCL-YGGTSKGL 718
>06_03_1275 +
28903961-28904123,28904225-28904322,28904406-28904550,
28904690-28904814,28904957-28905049,28905297-28905362,
28905459-28905524,28905790-28905870,28905947-28906123,
28906212-28906287,28906394-28906521,28906639-28906950
Length = 509
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -2
Query: 128 TNHQETSPQRIHHNLSKIMPA-S*QRPVQQLSFSIHS 21
TNH E P+ H LSKI+ A S RP+ +S+ +H+
Sbjct: 41 TNHVERPPKERH--LSKIIAAASGARPLADVSYCVHA 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,901,971
Number of Sequences: 37544
Number of extensions: 583265
Number of successful extensions: 1569
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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