Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40076
         (880 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0718 + 5484553-5484601,5484836-5484933,5485028-5485078,548...    93   3e-19
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664...    72   5e-13
09_04_0374 + 17051995-17052493,17053026-17053240                       29   4.9  
11_04_0036 + 12635480-12636422,12636674-12637164                       29   6.5  
02_01_0202 + 1366149-1366594,1368444-1368444,1368616-1368743,136...    28   8.6  

>07_01_0718 +
           5484553-5484601,5484836-5484933,5485028-5485078,
           5485744-5485857,5485887-5485937,5485938-5486138,
           5486240-5486341,5486879-5486986,5487053-5487286,
           5488250-5488500,5488592-5488763,5489165-5489320,
           5489405-5489455,5489499-5489591,5489814-5490014,
           5490105-5490236,5490308-5490481,5490755-5490994,
           5491213-5491407
          Length = 890

 Score = 93.1 bits (221), Expect = 3e-19
 Identities = 40/56 (71%), Positives = 46/56 (82%)
 Frame = +1

Query: 49  PDAKETGLAHLCEFIEDCEHVTLAVRILHVLGREGPKARQPSRYIRYIYNRVILES 216
           PDAKE+GL HLCEFIEDCE   ++ +ILH LG EGPK   PS+YIRYIYNRVILE+
Sbjct: 452 PDAKESGLFHLCEFIEDCEFTYMSTQILHFLGNEGPKTSDPSKYIRYIYNRVILEN 507



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/27 (55%), Positives = 16/27 (59%)
 Frame = +3

Query: 255 FGASRPELLPNIRVLLSRCQLDEDDEV 335
           FGA    L P I VLL RC  D DDE+
Sbjct: 521 FGALVDSLKPRIFVLLRRCLFDGDDEL 547


>03_02_0235 +
           6644083-6644125,6645218-6645315,6645448-6645498,
           6645573-6645686,6645771-6645971,6646047-6646148,
           6647245-6647352,6647745-6647995,6648108-6648279,
           6648341-6648397,6648555-6648710,6648807-6648857,
           6649053-6649193,6649270-6649464,6649534-6649665,
           6649768-6649941,6650396-6650635,6650761-6650955
          Length = 826

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 40/75 (53%), Positives = 46/75 (61%), Gaps = 19/75 (25%)
 Frame = +1

Query: 49  PDAKETGLAHLCEFIEDCEHVTLAVR-------------------ILHVLGREGPKARQP 171
           PDAKE GL +LCEFIEDCE   L+ +                   ILH+LG EGP+   P
Sbjct: 355 PDAKEIGLLYLCEFIEDCEFTYLSSQLPMNYQVVLLDIVKNADAMILHLLGNEGPRTSDP 414

Query: 172 SRYIRYIYNRVILES 216
           SRYIRYIYNRVILE+
Sbjct: 415 SRYIRYIYNRVILEN 429



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 41/106 (38%), Positives = 54/106 (50%), Gaps = 6/106 (5%)
 Frame = +3

Query: 255 FGASRPELLPNIRVLLSRCQLDEDDEVRDRAVFYSAILDS----GNPQL-INDYII-NIQ 416
           FGA    L P I VLL RC  D DDEVRDRA  Y   LD     G+ +  + +++  +  
Sbjct: 443 FGALVDALKPRIFVLLRRCLFDTDDEVRDRATLYLQTLDGEVAVGSTEKDVKEFLFGSFD 502

Query: 417 VPNPVLLEKSLSDYLASGDQSEPFNIAAVPTLKNHKSLKNLPLRFK 554
           VP    LE SL  Y  S    EPF+I+ V      + +K+ PL+ K
Sbjct: 503 VP-LANLEASLKTYEPS---EEPFDISLV-----SREVKSQPLQEK 539


>09_04_0374 + 17051995-17052493,17053026-17053240
          Length = 237

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 841 VREIWGRNFKPFPGKIWAP*RVLQAFQTGGIQIGRGRK 728
           +R  WG   +P  G+IW P R +Q  +TG ++ G GR+
Sbjct: 21  LRRRWGL-IRPPLGRIWRPSRWIQTEETGSVRDG-GRR 56


>11_04_0036 + 12635480-12636422,12636674-12637164
          Length = 477

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 464 FRRSKRALQHRGGSHAEEPQEPKESPVEI*TRKAPVVSREGQYTEQLQAIP 616
           FRR+ + +  RGG    +P  P  +     TR+AP  +   +  +Q + +P
Sbjct: 318 FRRNVKVIITRGGKSTRDPPYPNLTRTSSITREAPSGNTTDEEVQQEKTMP 368


>02_01_0202 +
           1366149-1366594,1368444-1368444,1368616-1368743,
           1368943-1369039
          Length = 223

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = -2

Query: 354 RIRRDHELRRLHLVGSVTTKPLYLAATQDGRLRTSNSRYCSSPNWT*LQNHSV 196
           R R    LR L L+G+ T  P        G  R    R C++PN    Q HSV
Sbjct: 94  RRRPSRSLRCLLLLGTSTRAPFLPPCHLSGSHRVRPPRPCAAPNPAVPQPHSV 146


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,610,755
Number of Sequences: 37544
Number of extensions: 525882
Number of successful extensions: 1168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)