Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40072
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 31 0.83
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409... 31 1.4
12_01_1069 - 11060045-11060262,11060404-11060545,11060624-110607... 30 1.9
07_03_1393 - 26245105-26246862 30 2.5
02_05_0154 - 26330109-26330189,26330274-26330411,26330518-263306... 29 3.3
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 29 3.3
01_06_1740 - 39575614-39576981 29 3.3
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 29 4.4
06_03_0850 - 25354002-25354391,25354480-25354575,25355352-253556... 29 5.8
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 5.8
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 5.8
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 29 5.8
05_01_0499 - 4166891-4166942,4167191-4167510 29 5.8
01_01_0092 + 722744-723459,723542-723711,723792-724885 29 5.8
09_03_0184 - 13205741-13206181 28 7.7
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 28 7.7
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529... 28 7.7
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 31.5 bits (68), Expect = 0.83
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 539 WRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGN 658
WR + +A D LG+ Y +E++S+S SDC +GN
Sbjct: 2 WRFLGASKALTSSDVWFLGKCYKLSSEELSNS-SDCESGN 40
>12_02_0370 +
18139557-18140469,18140561-18140704,18140804-18140956,
18141032-18141147,18141231-18141398,18142110-18142334,
18142458-18142577
Length = 612
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/61 (29%), Positives = 24/61 (39%)
Frame = +3
Query: 510 TERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRKNRPRP 689
T R +P+V AP K P +T V + P P AAP + +P P
Sbjct: 37 TSRSIPVVLPSAPSSKPPPPTQTAPPVPVVISEPPPPQPQPEPQPAAPSQPPPPQEQPSP 96
Query: 690 P 692
P
Sbjct: 97 P 97
>12_01_1069 -
11060045-11060262,11060404-11060545,11060624-11060776,
11060942-11061013,11062774-11063082,11063323-11063378,
11066436-11066533,11066616-11066700,11066800-11067001,
11067471-11067542,11069555-11069624,11071829-11072038,
11072337-11072609,11073912-11074183,11075354-11075557
Length = 811
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 543 APYKKDEPVEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRKNRPRPPESMKRQKKTT 722
+PYK+D +E LD+ ++ + PAV T ET + + + P ++ K+ T
Sbjct: 683 SPYKEDGSLEIEYSSLLDIRLLKDTDSVQPAVSTPLTETGIKGGSHAQKPANLDNHKEKT 742
>07_03_1393 - 26245105-26246862
Length = 585
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -3
Query: 190 KQTEWRKVQPWERELVICNGDGCAITSLSRAGK---AVTVAKPAKAMKTAKRRGENI 29
++ WR+ + + R V+ GDGCA+ ++R GK A+P + K +K R +
Sbjct: 199 REKSWRRYRDYRR-FVLVPGDGCAL-DINRVGKFRSGTNAARPPR-QKGSKNRNPRV 252
>02_05_0154 -
26330109-26330189,26330274-26330411,26330518-26330633,
26330782-26330863,26332706-26332770,26333016-26333112,
26334066-26334136,26334242-26334304,26334379-26334431,
26335143-26335192,26336295-26336340,26337014-26337019,
26337381-26337511,26337594-26337680,26338472-26338849
Length = 487
Score = 29.5 bits (63), Expect = 3.3
Identities = 15/59 (25%), Positives = 23/59 (38%)
Frame = +3
Query: 516 RVVPIVETGAPYKKDEPVEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRKNRPRPP 692
R+VP + A + EP + E + ST E + A E ++ P PP
Sbjct: 56 RLVPRADASAEAGEPEPAAEAEAEAVAASTDAEVEEGEAEAAVAVAEEEQEEEDEPPPP 114
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/80 (23%), Positives = 33/80 (41%)
Frame = +2
Query: 479 RSAKMLIKRKYRARCTYCRDWRSVQEGRACRKDDSRNLGRFYDSGAEDISSSGSDCSTGN 658
R+ + +RK R + T ++ + ++G D +E ++GSD
Sbjct: 188 RTVVCVKRRKSRKQSTEAAKENDDEDDEGPADSEDASMGEEDDEDSEAKDNAGSDEEPDE 247
Query: 659 PREKKEPTTPSGIDEATEKD 718
P KK+ T +A EKD
Sbjct: 248 PPAKKKATDDKQTKKAKEKD 267
>01_06_1740 - 39575614-39576981
Length = 455
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 612 EPKTSAPAVVTAAPETRGRRKNRPRPPESMKRQK 713
EP++ A A TAAP TRG PP+ ++++
Sbjct: 10 EPRSRARASGTAAPTTRGPAPQTHAPPQERRQEE 43
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 29.1 bits (62), Expect = 4.4
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = -1
Query: 660 GFPVLQSLPLELMSSAPES*K----RPRFLLSSFLQARPS-CTERQSR 532
G VLQS+P + SS+P S K P F+ SS ++R S C ++ R
Sbjct: 255 GVVVLQSVPTQQQSSSPSSSKLRADAPEFIPSSIKKSRASRCKAKKKR 302
>06_03_0850 -
25354002-25354391,25354480-25354575,25355352-25355634,
25357213-25357799
Length = 451
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 599 FYDSGAEDISSSGSDCSTGNPREKKEPTTPSGIDEATEKDNVI 727
FYDS D S++ +D + PR+ P S ++ ++D V+
Sbjct: 51 FYDSADGDASAAAADAADPPPRQPPPPPPASDGADSDDEDYVV 93
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 151 HVPMAEPFAI-QSVCSFVEADPHFCGHRAKN 240
HVPM EP I S C V AD G KN
Sbjct: 1336 HVPMQEPLRIASSCCEIVNADQVCAGEVGKN 1366
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 585 ETLDVSTTQEPKTSAP-AVVTAAPETRGRRKNRPRPPESMKRQKK 716
E LD T P + P AV+TAA + + RP P +S K+ KK
Sbjct: 35 EALDPQTPAPPPQAQPEAVLTAAQKALRSKPTRP-PEDSDKKNKK 78
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 28.7 bits (61), Expect = 5.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 546 PYKKDEPVEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRKNRPRPPESMKRQK 713
P K +EP ++ + + +EPK A A AA T + P+ E K ++
Sbjct: 116 PAKAEEPAKEEEPKAAEAPAAEEPKAEAEAEAEAA-ATEEPKTEEPKTEEPAKEEE 170
>05_01_0499 - 4166891-4166942,4167191-4167510
Length = 123
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 624 SAPAVVTAAPETRGRRKNRPRPPESMKRQKKTT*FPHGK 740
+A V +++PE + +++ RPRPP K + HG+
Sbjct: 23 AAAVVPSSSPEQQQQQQRRPRPPPGSKNGASPSSSAHGQ 61
>01_01_0092 + 722744-723459,723542-723711,723792-724885
Length = 659
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 128 VSITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 244
+S + +F NL S PLW +P F D+G ++Y
Sbjct: 92 ISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130
>09_03_0184 - 13205741-13206181
Length = 146
Score = 28.3 bits (60), Expect = 7.7
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +3
Query: 561 EPVEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRKNR-PRPPESMKRQKKTT*FPHG 737
+ V + D+ T +E + P + A ETRG+R+ R PRPP K+QK + +P
Sbjct: 85 QEVAAVAISNEDMRTMRE-REGIPELEEA--ETRGQRRRRTPRPP---KQQKLRSEWPIK 138
Query: 738 KR 743
KR
Sbjct: 139 KR 140
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/64 (25%), Positives = 24/64 (37%)
Frame = +3
Query: 501 NENTERVVPIVETGAPYKKDEPVEKTTVETLDVSTTQEPKTSAPAVVTAAPETRGRRKNR 680
+E+T P++ P P + + L S P+ S P AAP +
Sbjct: 549 SESTPMQPPVMPPPIPKLLSPPAPQAPMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTG 608
Query: 681 PRPP 692
P PP
Sbjct: 609 PGPP 612
>02_04_0496 +
23446039-23446964,23452755-23452845,23452946-23452996,
23453080-23453206,23453390-23453425,23453443-23453473,
23453488-23453576,23454341-23454462,23455601-23455778,
23458343-23458470,23458592-23458658,23459167-23459272,
23459365-23459473,23459965-23460084,23460187-23460220,
23460471-23460547,23460640-23460692,23460847-23460898,
23461270-23461767
Length = 964
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +2
Query: 605 DSGAEDISSSGSDCSTGNPREKKEPTTPSGIDEATEKDNV 724
D+ + S +G D +P + +PT +G D++ D V
Sbjct: 841 DTDTDTDSHTGDDVDNNDPANEVDPTANAGSDDSNTSDEV 880
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,112,814
Number of Sequences: 37544
Number of extensions: 396191
Number of successful extensions: 1610
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1609
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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