Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40069
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0314 - 17600970-17600974,17601230-17601357,17601832-176019... 81 9e-16
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 32 0.43
12_01_0833 - 7730761-7731030,7731171-7731425,7731565-7731736,773... 32 0.56
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 32 0.56
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 31 0.98
02_05_0408 + 28720508-28721052,28721346-28721430,28721520-287216... 31 1.3
11_06_0031 + 19425011-19425113,19425552-19425637,19425732-194258... 30 2.3
09_02_0068 - 3832858-3833228,3835773-3836223 30 2.3
09_01_0095 - 1403586-1403987,1406687-1406722,1406995-1407012,140... 29 3.0
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 29 3.0
01_05_0660 - 24071523-24071780,24071873-24072127,24072209-240723... 29 5.2
06_03_0405 - 20464701-20466287 28 6.9
03_02_0859 - 11853928-11854138,11854225-11854683,11854760-118549... 28 6.9
01_01_0548 - 4033077-4033349,4034007-4034261,4034362-4034533,403... 28 6.9
07_03_1007 + 23268771-23269021,23269098-23269128 28 9.2
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 28 9.2
01_03_0114 - 12649104-12649141,12650137-12650245,12650500-126506... 28 9.2
>02_03_0314 -
17600970-17600974,17601230-17601357,17601832-17601924,
17602145-17602257,17602520-17602627,17602724-17602828,
17603185-17603355,17603474-17603652,17603741-17603969,
17604841-17604955,17605137-17605312,17606060-17606143,
17606463-17606630,17607011-17607097,17607201-17607323
Length = 627
Score = 81.0 bits (191), Expect = 9e-16
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 1/73 (1%)
Frame = +3
Query: 36 MAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNGCGKTTIIECLRYAITGQMPPG 215
M+ V + I+GIRSF PE+ + I F PLTLI+G NG GKTTIIECL+ + TG++PP
Sbjct: 1 MSTVDKMLIKGIRSFDPENKNV--ITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPN 58
Query: 216 SRN-ECFVHDAKV 251
SR+ FVHD KV
Sbjct: 59 SRSGHTFVHDPKV 71
Score = 58.8 bits (136), Expect = 4e-09
Identities = 24/74 (32%), Positives = 45/74 (60%)
Frame = +1
Query: 511 HQEDSSWPLDEGKKVKERFDEIFDADKYSDCLDRLKKIRKDYAQNLKLLEQEVAHLTEKK 690
HQ++S+WPL + +K++FD+IF A +Y+ L+ +KK+ KD AQ +K ++ +L K
Sbjct: 187 HQDESNWPLQDPSTLKKKFDDIFSATRYTKALEVIKKLHKDQAQEIKTFRLKLENLQTLK 246
Query: 691 PDLDQEKLNVVNSR 732
+ + N+ +
Sbjct: 247 DQAYRLRDNIAQDQ 260
Score = 32.7 bits (71), Expect = 0.32
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +2
Query: 425 VSSRCADLDILMHEELGVSKAILNSVVF 508
+S RCAD+D + +GVSKAIL +V+F
Sbjct: 158 LSYRCADMDREIPALMGVSKAILENVIF 185
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 32.3 bits (70), Expect = 0.43
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = +3
Query: 96 DEQRILFDSPLTLILGQNGCGKTTIIECL 182
D IL S LTL+LG GCGKTT++ L
Sbjct: 177 DVTGILKPSRLTLLLGPPGCGKTTLLLAL 205
>12_01_0833 -
7730761-7731030,7731171-7731425,7731565-7731736,
7731873-7732106,7732362-7732495,7734116-7734199,
7735086-7735376,7735566-7735898,7736351-7736424,
7736558-7736653,7736876-7737029,7737118-7737221,
7737325-7737485,7737774-7738087,7738950-7739231,
7739909-7740210,7740513-7740713,7740924-7741014,
7741424-7741500,7741595-7741754,7742026-7742110,
7742194-7742288
Length = 1322
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 108 ILFDSPLTLILGQNGCGKTTIIECL 182
I+ S +TL+LG GCGKTT+++ L
Sbjct: 27 IIKPSRITLLLGPPGCGKTTLLKAL 51
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 31.9 bits (69), Expect = 0.56
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Frame = +3
Query: 87 EDTDEQRILFDSPLT-LILGQNGCGKTTII 173
E TDE++ + PLT ILG++G GKTT++
Sbjct: 1002 ELTDEEQAIIRFPLTSFILGRSGTGKTTVL 1031
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 31.1 bits (67), Expect = 0.98
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 63 RGIRSFGPEDTDEQRILFD--SPLTLILGQNGCGKTTIIECLR 185
RG GP DE + D SP+ ILG GKT +++C+R
Sbjct: 678 RGASKKGPIKEDETKNGSDLRSPICCILGHVDTGKTKLLDCIR 720
>02_05_0408 +
28720508-28721052,28721346-28721430,28721520-28721604,
28721775-28722019,28722250-28722501
Length = 403
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 559 ERFDEIFDADKYSDCLDRLK---KIRKDYAQNLKLLEQEVAHLTEKKPDLD 702
ER ++ D Y D D +K KI++D A+ LE A + +KPD D
Sbjct: 185 ERVRDLLDFSIYLDISDEVKFAWKIQRDMAERGHSLESIKASIEARKPDFD 235
>11_06_0031 +
19425011-19425113,19425552-19425637,19425732-19425829,
19425950-19426067,19426200-19426289,19426770-19427074,
19427162-19427357,19427435-19427617,19427713-19427982,
19428906-19429151,19429633-19429704,19430087-19430104
Length = 594
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 117 DSPLTLILGQNGCGKTTIIECL 182
DS + ++LG+NG GKTT I L
Sbjct: 372 DSQIVVMLGENGTGKTTFIRML 393
>09_02_0068 - 3832858-3833228,3835773-3836223
Length = 273
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 135 ILGQNGCGKTTIIECLRYAITGQMPPGSR 221
I+G +GCGKTT+++ L A+ PP ++
Sbjct: 134 IMGPSGCGKTTLLDTLA-AVAAVTPPEAK 161
>09_01_0095 -
1403586-1403987,1406687-1406722,1406995-1407012,
1407331-1407513
Length = 212
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGSRNE 227
LT ILG + C IEC Y Q+ G+R+E
Sbjct: 49 LTAILGDDICDARVAIECSAYRCNPQLAIGARDE 82
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 117 DSPLTLILGQNGCGKTTIIECL 182
DS + ++LG+NG GKTT I L
Sbjct: 376 DSQIIVMLGENGTGKTTFIRML 397
>01_05_0660 -
24071523-24071780,24071873-24072127,24072209-24072380,
24072458-24072685,24072785-24072918,24073005-24073088,
24073231-24073521,24073599-24073931,24074016-24074266,
24074354-24074620,24074707-24074867,24074978-24075294,
24075386-24075667,24075753-24076054,24076147-24076237,
24076326-24076379,24076497-24076573,24076700-24076859,
24077129-24077213,24077421-24077630,24077736-24078097
Length = 1457
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGSRN 224
LT ++G +G GKTT+++ L TG GS N
Sbjct: 900 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGSIN 932
>06_03_0405 - 20464701-20466287
Length = 528
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 272 RVLLLIIHFCIMNKAFVPATRRHLTSDCIS*AFNYCCFTTSILP 141
+ LLL I FCI + ++P+ D S F +C SI P
Sbjct: 5 KTLLLFIIFCIFSSCYIPSPAIASDHDPSSKGFIHCLTKKSIPP 48
>03_02_0859 -
11853928-11854138,11854225-11854683,11854760-11854991,
11855064-11855187,11855276-11855960,11856429-11856735,
11856832-11858188
Length = 1124
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 30 YNMAGVKSLAIRGIRSFGPEDTDEQRILFDSPLTLILGQNG 152
Y+ G+++L I G+R E+ E ++ ++ T +LG+ G
Sbjct: 616 YSSLGLRTLVI-GVRELSQEEFQEWQMAYEKASTALLGRGG 655
>01_01_0548 -
4033077-4033349,4034007-4034261,4034362-4034533,
4034616-4034839,4035168-4035332,4035591-4035881,
4035971-4036303,4036391-4036485,4036570-4036689,
4036778-4036934,4037176-4037279,4037383-4037543,
4037636-4037952,4038655-4038936,4039020-4039321,
4039453-4039543,4040227-4040280,4040367-4040684,
4041008-4041092,4041178-4041266,4041474-4041594,
4042136-4042431
Length = 1434
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGS 218
LT ++G +G GKTT+++ L TG + GS
Sbjct: 891 LTALVGVSGAGKTTLMDVLAGRKTGGLIEGS 921
>07_03_1007 + 23268771-23269021,23269098-23269128
Length = 93
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 187 MQSLVKCRLVAGTNALFMMQK*MINRSTRSSEIKDCQCKRQT 312
MQS+ CR+VA NA + Q M N +T SS + +C +T
Sbjct: 18 MQSMSTCRVVACMNAQQIQQNKM-NVTTSSSSKRQWRCDGRT 58
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 126 LTLILGQNGCGKTTIIECLRYAITGQMPPGSRN 224
LT ++G +G GKTT+++ L TG G+ N
Sbjct: 1135 LTALMGFSGAGKTTLMDVLAGRKTGGYTEGTIN 1167
>01_03_0114 -
12649104-12649141,12650137-12650245,12650500-12650691,
12650797-12650904,12650986-12651162,12652331-12652459,
12653314-12653589,12653667-12653916,12654909-12655561
Length = 643
Score = 27.9 bits (59), Expect = 9.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 517 EDSSWPLDEGKKVKERFDEIFDADKYSDCL 606
E SSW +EG + ER + DAD+ S L
Sbjct: 187 EQSSWTREEGWGLSERCPPVGDADRNSSSL 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,758,459
Number of Sequences: 37544
Number of extensions: 402441
Number of successful extensions: 1284
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1283
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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