Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40068
         (248 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812...    93   4e-20
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338     92   5e-20
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228...    92   5e-20
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237...    26   4.8  
06_03_0897 + 25762154-25763056,25764189-25764800                       25   6.4  
09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827           25   8.5  

>12_02_0486 +
           19577507-19577568,19578119-19578218,19581128-19581214,
           19581852-19581914
          Length = 103

 Score = 92.7 bits (220), Expect = 4e-20
 Identities = 38/55 (69%), Positives = 42/55 (76%)
 Frame = +3

Query: 45  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 209
           MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL  CRQCFR  A DIGF K+
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKV 55


>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
          Length = 56

 Score = 92.3 bits (219), Expect = 5e-20
 Identities = 38/54 (70%), Positives = 41/54 (75%)
 Frame = +3

Query: 45  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
           MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL  CRQCFR  A DIGF K
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54


>03_06_0123 -
           31821915-31822094,31822187-31822324,31822413-31822817,
           31822897-31823212,31823305-31823543,31823800-31823903,
           31823987-31824145,31824326-31824510,31825318-31825427,
           31826900-31826947,31827047-31827241,31827354-31827422,
           31829521-31829620,31829879-31829940
          Length = 769

 Score = 92.3 bits (219), Expect = 5e-20
 Identities = 38/54 (70%), Positives = 41/54 (75%)
 Frame = +3

Query: 45  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 206
           MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL  CRQCFR  A DIGF K
Sbjct: 1   MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54


>04_04_0910 -
           29321128-29321276,29321977-29322508,29323301-29323706,
           29323933-29324028,29324563-29324645,29326620-29326732,
           29327156-29327315
          Length = 512

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 60  IWYSHPRRYGQGSRSCRSCSNRHG 131
           IW  H RR G+GS + R   +RHG
Sbjct: 306 IWPPHARRDGRGSEAAR--MSRHG 327


>06_03_0897 + 25762154-25763056,25764189-25764800
          Length = 504

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 134 NPQVRFEHMQTVLQRVCS*HRIQEAGLNGVGIINFTFK 247
           NP+V  +    V Q +   HR+ E  L+ +G +N   K
Sbjct: 325 NPEVMQKVQDEVRQLLVGQHRVTEESLSKLGYMNLVIK 362


>09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827
          Length = 144

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 93  GSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIG 197
           G+  C SC NR  L  K   ++     R  + DIG
Sbjct: 101 GTNPCSSCRNRSLLTAKLNFSLDLNDIRVISEDIG 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,735,737
Number of Sequences: 37544
Number of extensions: 125890
Number of successful extensions: 267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)