Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40056
(881 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0273 + 15191628-15191909 33 0.40
04_01_0566 + 7250644-7250985 31 1.2
01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823 29 3.7
01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819 29 3.7
11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750 29 4.9
08_02_0380 - 16512461-16512522,16512696-16512857,16512942-165130... 29 4.9
03_03_0139 + 14769393-14769764,14770113-14770193,14770537-14770737 29 4.9
09_04_0627 - 19061106-19061474,19062067-19062909,19063395-190635... 28 8.6
04_04_1473 - 33843414-33843788,33843833-33844261,33845738-33846100 28 8.6
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 28 8.6
03_05_0224 - 22099472-22099813,22100496-22101032 28 8.6
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 28 8.6
02_05_0171 - 26441007-26441918 28 8.6
>08_02_0273 + 15191628-15191909
Length = 93
Score = 32.7 bits (71), Expect = 0.40
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Frame = +3
Query: 411 VPPPPPVRTTSQLSGTKYGYVDHNNYNYCPEIEKTVASLNNTEMNHNLCLSYIS----YD 578
+PPPPP + + T D++N +Y E+E A N +Y++ YD
Sbjct: 1 MPPPPPPPRRTTAAATAAADNDNDNVDYAAEMEADAA--GNGSARSAAAAAYVARAVVYD 58
Query: 579 --DSHVNLMIYGESAVTKLSYCCH-QSH 653
D + E +T+ S+C H +SH
Sbjct: 59 GVDPFEGMEFDNEEPLTRTSWCRHSRSH 86
>04_01_0566 + 7250644-7250985
Length = 113
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -3
Query: 543 SSPYCSEKPPSSLFRGSSCNYCDP 472
SSP+ ++PP +LFRG + N C P
Sbjct: 54 SSPHRRQQPPPALFRGRAANGCMP 77
>01_06_0599 - 30513858-30514079,30514157-30514588,30514683-30514823
Length = 264
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 779 GKGEFNKVQTHGQKPKFNVWNVLCEAEWWQE 687
G GE N V HG P F+ N L E+E QE
Sbjct: 18 GDGEKNTVWRHGAPPTFDTVNSLFESERTQE 48
>01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819
Length = 266
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -1
Query: 779 GKGEFNKVQTHGQKPKFNVWNVLCEAEWWQE 687
G GE N V HG P ++ N L EAE QE
Sbjct: 20 GDGEKNTVWRHGAPPTYDAVNSLFEAERTQE 50
>11_08_0068 + 28143712-28143853,28145496-28146525,28146654-28146750
Length = 422
Score = 29.1 bits (62), Expect = 4.9
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -2
Query: 733 SSMFGMCY--ARLNGGRSLSSQGFVLGESWLW*QQYESLVTADSPYIIRLTCESS*EM*E 560
S +F MC ARLNG + + S G +GE + Y L +PY + +S E +
Sbjct: 236 SGLFKMCEKGARLNGSKMVVSDGSEIGEYIIGDAGYPLLPWLLTPYQEKDLSDSKLEFNK 295
Query: 559 RH 554
RH
Sbjct: 296 RH 297
>08_02_0380 -
16512461-16512522,16512696-16512857,16512942-16513001,
16513100-16513288,16514127-16514220,16514681-16514896
Length = 260
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/43 (27%), Positives = 19/43 (44%)
Frame = +1
Query: 622 PNFHTVVTKAMIHPEQSPVKRDSCHHSASHNTFQTLNFGF*PW 750
P F V T + H E+S +K + H+++ GF W
Sbjct: 72 PKFDNVTTNVICHGEKSVIKEGHKSFPSGHSSWSFAGLGFLAW 114
>03_03_0139 + 14769393-14769764,14770113-14770193,14770537-14770737
Length = 217
Score = 29.1 bits (62), Expect = 4.9
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 351 SKLMRKSFHGSAGKILTAAKVPPPPPVRTTSQLSGTKYGY 470
S L S SA + T + PPPPP S ++G +YG+
Sbjct: 77 SLLPSSSSSSSAAAVGTQLRPPPPPP-LLPSHVAGVRYGH 115
>09_04_0627 -
19061106-19061474,19062067-19062909,19063395-19063501,
19064301-19064332,19064384-19064663,19065092-19065475,
19066730-19066803,19067244-19067310,19067415-19067486,
19067941-19068000,19068683-19068734,19068874-19068943,
19069110-19069372
Length = 890
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +3
Query: 333 NPNLERSKLMRKSFHGSAGKILT----AAKVPPPPPVRTTS 443
NP+L + R +HG AG + AA PPPPP R S
Sbjct: 397 NPDLIEVEDRRCCYHGFAGADASHGYAAASSPPPPPQRCPS 437
>04_04_1473 - 33843414-33843788,33843833-33844261,33845738-33846100
Length = 388
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 339 NLERSKLMRKSFHGSAGKILTAAKVPPPPPVRTTSQLSGTK 461
+LE +KL +K+ + L A +PPPPP + ++L+ K
Sbjct: 342 DLELAKLKKKA---KEQRQLQQAALPPPPPTQVAAELAAQK 379
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 28.3 bits (60), Expect = 8.6
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +3
Query: 366 KSFHGSAGKILTAAKVPPPPPVRTTSQLSGTKYGYVDHNNYNYCPEIEKTVASLNNTEMN 545
+ F AG TAAK P P P +S + G+ YG + +++ + + EM
Sbjct: 13 EGFRSLAGSTSTAAKAPNPKP---SSDIGGSTYGSFANLKITAEKLVKEQASVKTDLEMT 69
Query: 546 H 548
H
Sbjct: 70 H 70
>03_05_0224 - 22099472-22099813,22100496-22101032
Length = 292
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 360 MRKSFHGSAGKILTAAKVPPPPPVRTTSQLSG 455
+RK A A+K+PPPP V T + L G
Sbjct: 27 VRKRVQRVAAAYHAASKLPPPPAVATKASLGG 58
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 28.3 bits (60), Expect = 8.6
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Frame = +3
Query: 273 SPLSGYLSEGHLEYSAASGTNPNLERSKLMRKSFHGSAGK---ILTAAKVPPPPPVRTTS 443
S L L SAA GT P R + R + AG+ + A PPPPP R
Sbjct: 51 SALRASLRRSSASASAARGTTPPA-RMAVARPIYGRVAGEPVYVAEPALPPPPPPPRRRQ 109
Query: 444 QLSGTKYG 467
+ G G
Sbjct: 110 PVHGLPMG 117
>02_05_0171 - 26441007-26441918
Length = 303
Score = 28.3 bits (60), Expect = 8.6
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 315 SAASGTNPNLERSKLMRKSFHGSAGKILTAAKVPPPPPVRTTSQLS 452
S++S ++ + S RK +A + A PPPPP + QL+
Sbjct: 241 SSSSSSSSSSSGSPKRRKRGEAAAASMAMALVPPPPPPAQAPVQLA 286
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,574,764
Number of Sequences: 37544
Number of extensions: 597350
Number of successful extensions: 2714
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2670
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -