Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40054
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 89 3e-18
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 88 4e-18
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 46 2e-05
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.6
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 2.2
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 3.8
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 3.8
03_02_0488 - 8824980-8825267,8825364-8827775 29 3.8
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 5.0
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 6.6
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905... 27 8.7
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 89.0 bits (211), Expect = 3e-18
Identities = 43/87 (49%), Positives = 64/87 (73%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 433
+V V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGKRIR +LDG+
Sbjct: 93 VVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGA 148
Query: 434 QLIKVHLDKNQQTTIEHKVDTFQSVTR 514
++IK+ LD ++ E+K++TF +V R
Sbjct: 149 KVIKIFLDPKERNNTEYKLETFSAVYR 175
Score = 87.8 bits (208), Expect = 6e-18
Identities = 46/99 (46%), Positives = 67/99 (67%), Gaps = 2/99 (2%)
Frame = +3
Query: 3 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 176
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 177 MPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLSP 293
KAF+KI +RLVRELEKKFSGK ++ T R P
Sbjct: 67 YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPP 105
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 88.2 bits (209), Expect = 4e-18
Identities = 43/87 (49%), Positives = 61/87 (70%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGS 433
+V V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+R LDG
Sbjct: 106 VVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGR 161
Query: 434 QLIKVHLDKNQQTTIEHKVDTFQSVTR 514
+++K+ LD ++ E+K+DTF SV R
Sbjct: 162 KIMKIFLDPKERNNTEYKLDTFSSVYR 188
Score = 74.1 bits (174), Expect = 8e-14
Identities = 41/81 (50%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
Frame = +3
Query: 57 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 230
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 231 EKKFSGKH*SLLETVRSCLSP 293
EKKFSGK L+ T R P
Sbjct: 98 EKKFSGKDVVLVATRRIVRPP 118
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 46.4 bits (105), Expect = 2e-05
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +3
Query: 111 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKH*SLLETVRSCLS 290
+Y+ ++ N K ++I+V KAF+KI +RLV+ELEKKFSGK + + R +
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKD-VVFDATRRIVR 88
Query: 291 PATK 302
P K
Sbjct: 89 PLNK 92
Score = 33.1 bits (72), Expect = 0.17
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +2
Query: 254 LVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 403
+VF R+I+ +P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 78 VVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 380 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 487
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 329 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 445
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +3
Query: 63 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 63 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 12 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 188
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 189 KAFQKI 206
+ +++
Sbjct: 359 DSSEEL 364
>03_02_0568 +
9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/92 (22%), Positives = 44/92 (47%)
Frame = +3
Query: 9 IKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKL 188
I SGA + + S L +L + Q ++YITK +++ +K+ IY+P +
Sbjct: 323 IARSGAREANQKVCKSVILKDLYQEMERMKQGSQVYITKLSDVKAAREKN-GIYIPQERF 381
Query: 189 KAFQKIQIRLVRELEKKFSGKH*SLLETVRSC 284
A ++ + + +R+ + ++ L + SC
Sbjct: 382 -ALEEAEKKTMRDKIEYLETQNKELKMNIESC 412
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 63 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 197
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>03_04_0228 -
18989688-18989807,18990300-18990345,18990452-18990552,
18990624-18990702,18990788-18990868,18991440-18991502,
18994171-18994246,18994980-18995246,18995994-18996076,
18996792-18996922,18997043-18997174
Length = 392
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 316 QTKEATLKDIDLCVRCYPRGLG 381
Q ++++LK CVRC+P G G
Sbjct: 184 QKRDSSLKYQTRCVRCFPNGTG 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,019,630
Number of Sequences: 37544
Number of extensions: 294422
Number of successful extensions: 676
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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