Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40048
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0355 + 28657833-28660665,28660762-28661126 29 0.69
02_05_0140 - 26218828-26219759,26219885-26220002,26220089-262202... 27 1.6
01_01_0007 + 28940-28976,29146-29228,29885-29963,30258-30325,305... 27 2.8
04_04_0671 - 27157692-27158620,27158711-27158828,27158967-271591... 26 3.7
09_04_0434 - 17533633-17534637 25 6.4
08_02_0319 - 15742524-15742567,15742691-15742825,15742922-157430... 25 6.4
10_01_0026 - 351737-353443 25 8.5
07_03_1713 + 28939446-28939574,28939674-28940231,28940338-289404... 25 8.5
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 25 8.5
02_04_0182 + 20719782-20720033,20720502-20720605,20720693-207210... 25 8.5
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = -3
Query: 234 WTSSEPT--WCEVVTGAHRHPRRKCATHL 154
WT++ P W V G HRHP R A L
Sbjct: 56 WTAAAPYCGWLGVTCGGHRHPLRVTALEL 84
>02_05_0140 -
26218828-26219759,26219885-26220002,26220089-26220278,
26220380-26220514,26220617-26220714,26221697-26221866,
26222586-26222961
Length = 672
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 104 LQTETHYCFTAEIGGXGGTHPRGLHKRSYHL 12
+QT C+T GG G+ GL+KR+Y L
Sbjct: 112 VQTCAVACYTIAFGGGFGSTLLGLNKRTYEL 142
>01_01_0007 +
28940-28976,29146-29228,29885-29963,30258-30325,
30505-30606,31377-31466,31542-31616,31712-31744,
32277-32330,32400-32471,32543-32617,32975-33124
Length = 305
Score = 26.6 bits (56), Expect = 2.8
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -2
Query: 205 SGYWSP*TSTT*MRHPP*DIS-SKVSIIVTTAAPPFKLKRITASRQK*AGXVVPTRADST 29
SG SP T + + H P +S S +S++V T+ PP + AS K + + S+
Sbjct: 220 SGPRSPVTEASKVVHSPTTMSASGLSMLVETSMPPKRGVLSRASSMKEGSQELSNGSSSS 279
Query: 28 RGPTT 14
PTT
Sbjct: 280 GEPTT 284
>04_04_0671 -
27157692-27158620,27158711-27158828,27158967-27159156,
27159281-27159415,27159537-27159634,27160034-27160206,
27160299-27160772,27161464-27161518
Length = 723
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 104 LQTETHYCFTAEIGGXGGTHPRGLHKRSYHL 12
+QT C+T GG G+ GL+K++Y L
Sbjct: 163 IQTCAVACYTIGYGGGFGSFLLGLNKKTYEL 193
>09_04_0434 - 17533633-17534637
Length = 334
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -3
Query: 78 HGRNRRGWWYPPARTPQEVLPP 13
H + + W PPARTP PP
Sbjct: 311 HPQPQEVMWPPPARTPHPPPPP 332
>08_02_0319 -
15742524-15742567,15742691-15742825,15742922-15743020,
15746200-15746325,15746639-15746728,15746860-15746875
Length = 169
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -1
Query: 101 QTETHYCFTAEIGGXGGTH 45
Q+ +HY +T IG GG H
Sbjct: 54 QSMSHYIYTTSIGQAGGCH 72
>10_01_0026 - 351737-353443
Length = 568
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 142 NLYLKVGGAFTSWMSMGSSNHFTP 213
N+Y GG W GSSN+ P
Sbjct: 149 NVYYATGGLPPMWQQHGSSNYSIP 172
>07_03_1713 +
28939446-28939574,28939674-28940231,28940338-28940460,
28940676-28940912
Length = 348
Score = 25.0 bits (52), Expect = 8.5
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +1
Query: 16 W*DLLWSPRGWVPPXPP 66
W L W P + PP PP
Sbjct: 114 WKILPWGPEAYAPPPPP 130
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 134 DLRTYISRWVAHLRRGCLWAPVTTSHQVGSELVH 235
DL +S W+ C W VT S S +VH
Sbjct: 107 DLDGVLSSWMDDSLNFCSWRGVTCSSSYPSRVVH 140
>02_04_0182 +
20719782-20720033,20720502-20720605,20720693-20721066,
20721302-20721609,20721853-20722092
Length = 425
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 224 QSPPGVKWLLEPIDIHDVNAPPTLRYKF*GLNYSYNGCPTLQTETH 87
++ P + L PI + VNA +YK G Y +G PTL H
Sbjct: 87 EAAPVLAGLSTPIVVAKVNAD---KYKKLGSKYGVDGFPTLMLFDH 129
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,786,717
Number of Sequences: 37544
Number of extensions: 171158
Number of successful extensions: 432
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 61
effective length of database: 12,503,164
effective search space used: 262566444
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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