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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40038
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    62   4e-10
01_05_0142 - 18564697-18564792,18564824-18564928,18565606-185656...    35   0.080
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116...    30   2.3  
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239...    29   3.0  
10_01_0359 + 3956527-3956616,3957623-3957818,3958102-3959418,395...    29   5.3  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    28   9.2  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 36/84 (42%), Positives = 49/84 (58%)
 Frame = +3

Query: 255 IVLNHRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRF 434
           IV   RL E   F DKK +  ++K Y+K L AKL+    ++ E FK N+    K +LG+ 
Sbjct: 70  IVDTFRLQEQPPF-DKKQFVTFMKRYIKNLSAKLDA---EKQEEFKKNIEGATKYLLGKL 125

Query: 435 KELQFFTGESMDCDGMVAMMEYRD 506
           K+LQFF GESM  DG +    Y+D
Sbjct: 126 KDLQFFVGESMHDDGGLVFAYYKD 149



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
 Frame = +1

Query: 55  MKIYKDIITGDEMFSDTYKMKLVDE-VIYEVTGRLVTRAQGDIQIEGFNPSAEEA--DEG 225
           M +Y+D++TGDE+ SD++  + ++  +++EV G+ V +   D+ I G NPSAE    DEG
Sbjct: 1   MLVYQDLLTGDELLSDSFPYREIENGILWEVDGKWVVQGAIDVDI-GANPSAEGGGDDEG 59

Query: 226 TD 231
            D
Sbjct: 60  VD 61


>01_05_0142 -
           18564697-18564792,18564824-18564928,18565606-18565678,
           18566262-18567637
          Length = 549

 Score = 34.7 bits (76), Expect = 0.080
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
 Frame = -1

Query: 587 ISYLTFRISLLLDH-V*KTS*LVFAYHQVSIFHHGNHAITIHGLPSKEL----KFLKPAE 423
           IS+LT +++  L++ +      +   H+   FHH  H   ++  PSK+L    ++L+   
Sbjct: 214 ISFLTDKVAQSLENFIQYHPRAIQEAHRPKDFHHMLHLFQMYLKPSKKLVEGSQYLERGR 273

Query: 422 DVFHYFVHVCFKYFNLVRRL 363
             FH F ++C++Y  + R+L
Sbjct: 274 -YFHSFANICYRYLKIGRKL 292


>05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,
            1164082-1164240,1164663-1164797,1165116-1165268,
            1165358-1165479,1165599-1166541,1166677-1166728,
            1166873-1167963,1168058-1168384,1168479-1168559,
            1168649-1168717,1168809-1168937,1169038-1169121,
            1169210-1169275
          Length = 1321

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = +3

Query: 294  GDKKSYTL-YLKDYMKKLV-AKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQFFTGESM 467
            G +K  TL  L++Y+  +V A L+    +Q+E FK  +NKV        K L+ F+ + M
Sbjct: 1140 GSEKMVTLDNLEEYVSSIVDATLKSGISNQIEAFKAGINKVF-----ALKTLRLFSEDEM 1194

Query: 468  D 470
            +
Sbjct: 1195 E 1195


>02_01_0336 +
           2397648-2397812,2398367-2398441,2398860-2398975,
           2399155-2399269,2399360-2399488,2399809-2399856,
           2400369-2400448,2400628-2400824,2400916-2401202,
           2401281-2401307,2401353-2401538,2401633-2402094,
           2402201-2402350,2402612-2402687,2402851-2402978,
           2403244-2403435,2403559-2403690,2403767-2403889,
           2404128-2404346,2404518-2404679
          Length = 1022

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 369 APSLPILLLIFSYSL*GTMCRISCHRRRMFRLACGSGLFNS 247
           APS  +   + SYSL GT   +   RR +F LA    +F S
Sbjct: 687 APSFQVAFSLMSYSLEGTDSLLPSRRRSLFTLATSMIMFFS 727


>10_01_0359 +
           3956527-3956616,3957623-3957818,3958102-3959418,
           3959482-3960445,3960588-3960648,3961500-3961946
          Length = 1024

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 267 HRLVETYAFGDKKSYTLYLKDYMKKLVAKLEEKAPDQVEVFKTNMNKVMKDILGRFKELQ 446
           H L+   A  D  S +L  ++++   V   +E+A  Q+EV K  +    K+I     EL 
Sbjct: 177 HELIRAGAENDALSRSLEEREHLMMKVGGEKEQAESQIEVLKGTIQSGEKEISSLKYELH 236

Query: 447 FFTGE 461
             + E
Sbjct: 237 VLSKE 241


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 160 TRAQGDIQIEGFNPSAEEADEGTDSAVES 246
           TR+   +Q++GF PSA ++ +G+ + V S
Sbjct: 827 TRSSDKVQLKGFVPSAPKSSQGSRTYVSS 855


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,513,630
Number of Sequences: 37544
Number of extensions: 382971
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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