Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS20151
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0447 + 17688248-17688319,17688414-17688515,17688852-176889...    29   3.2  
12_02_0725 - 22545423-22546251,22546352-22546547,22546791-225469...    28   9.8  

>09_04_0447 +
           17688248-17688319,17688414-17688515,17688852-17688981,
           17689198-17689290,17689363-17689451,17689889-17689969,
           17690118-17690207,17690653-17690772,17690877-17690927,
           17691125-17691171,17691321-17691378,17691451-17691507
          Length = 329

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 316 KAAISNQTNAKVFEILKSAGIKTAFVKIASETAFLSKKCEMIPIEWVTRRLATGS 480
           K  + N+T+   F+  +      A V    +   ++K+C + P+E+V R   TGS
Sbjct: 56  KGQVLNETSLWWFDRTRHI-TPNAVVSSPDKNVTIAKRCSVFPVEFVVRGYVTGS 109


>12_02_0725 -
           22545423-22546251,22546352-22546547,22546791-22546973,
           22547076-22547275,22548030-22548133
          Length = 503

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = -2

Query: 566 VVCVILKERLLFWRSEPEASGTPGFLFRNEPVARRRVTHSMGIISHFLDKNAVSEAI 396
           +VC+ L   LL W+ E  +    G L R+EP+A      S   I H + K  +  ++
Sbjct: 65  LVCLALLVVLLTWKWEKGSLRNRGELLRSEPLALSHPVQSK-YIDHDISKEEIFSSL 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,833,680
Number of Sequences: 37544
Number of extensions: 496569
Number of successful extensions: 1105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)