Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20129
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1141 - 24264534-24264635,24265542-24265616,24265709-242657... 101 4e-22
07_01_0093 + 702223-702348,703434-703556,703646-703702,703797-70... 101 4e-22
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 101 4e-22
12_02_0477 + 19503678-19503803,19504381-19504422,19504631-195046... 98 5e-21
07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659 54 9e-08
04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585 33 0.30
07_03_0434 + 18175560-18175695,18176068-18176177,18176553-181766... 31 1.2
01_06_1303 - 36132588-36132710,36133879-36134103,36134318-361347... 30 1.6
04_01_0576 + 7466032-7466802,7468382-7468444,7469043-7469122,746... 30 2.1
08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695 29 3.7
05_01_0297 - 2314687-2316021 29 4.9
08_02_0610 + 19307537-19308011,19308187-19310846 28 6.5
03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068 28 6.5
02_05_0250 + 27153048-27154453,27154546-27154885 28 6.5
08_02_0733 + 20546072-20546325,20546924-20547017,20547441-205476... 28 8.6
05_01_0479 - 3920992-3921513,3921643-3921756,3921905-3922482,392... 28 8.6
05_01_0478 - 3910575-3912989 28 8.6
04_01_0031 + 381389-381841 28 8.6
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 28 8.6
>07_03_1141 -
24264534-24264635,24265542-24265616,24265709-24265765,
24265903-24266025,24266509-24266520,24267014-24267157,
24267606-24267626
Length = 177
Score = 101 bits (243), Expect = 4e-22
Identities = 45/88 (51%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQ 432
NGKK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ ++G+ ++DL++P D L Q
Sbjct: 85 NGKKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTESGNTKDDLRLPTDDSLLGQ 144
Query: 433 LRTDFDSGKELLCTVLKSCGEECVIASK 516
++T F GK+L+ TV+ + GEE + A K
Sbjct: 145 IKTGFGEGKDLVVTVMSAMGEEQICALK 172
Score = 92.7 bits (220), Expect = 3e-19
Identities = 44/81 (54%), Positives = 57/81 (70%), Gaps = 5/81 (6%)
Frame = +2
Query: 59 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK----IVEMSTSKTGKHGH 223
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK +VE+STSKTGKHGH
Sbjct: 14 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKGFGKVVEVSTSKTGKHGH 73
Query: 224 AKVHLVGIDISMVKSMKISVP 286
AK H V IDI K ++ VP
Sbjct: 74 AKCHFVAIDIFNGKKLEDIVP 94
>07_01_0093 +
702223-702348,703434-703556,703646-703702,703797-703871,
704105-704212
Length = 162
Score = 101 bits (243), Expect = 4e-22
Identities = 45/77 (58%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Frame = +2
Query: 59 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVH 235
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK+VE+STSKTGKHGHAK H
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCH 60
Query: 236 LVGIDISMVKSMKISVP 286
VGIDI K ++ VP
Sbjct: 61 FVGIDIFNGKKLEDIVP 77
Score = 99.5 bits (237), Expect = 2e-21
Identities = 44/90 (48%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Frame = +1
Query: 256 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQ 432
NGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G+ ++DL++P D L Q
Sbjct: 68 NGKKLEDIVPSSHNCDVPHVDRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTDDTLTNQ 127
Query: 433 LRTDF-DSGKELLCTVLKSCGEECVIASKQ 519
++ F + GK+++ TV+ + GEE + A K+
Sbjct: 128 IKNGFGEEGKDMILTVMSAMGEEQICAVKE 157
>03_06_0030 + 31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 101 bits (243), Expect = 4e-22
Identities = 46/88 (52%), Positives = 65/88 (73%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 NGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQ 432
NGKK EDI PS+HN DVPHV R DYQL DIS+DG+++L+ ++G ++DL++P D L TQ
Sbjct: 1403 NGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGGTKDDLRLPSDEALLTQ 1462
Query: 433 LRTDFDSGKELLCTVLKSCGEECVIASK 516
++ F GK+L+ TV+ + GEE + A K
Sbjct: 1463 IKDGFAEGKDLIVTVMSAMGEEQICALK 1490
Score = 83.8 bits (198), Expect = 1e-16
Identities = 44/90 (48%), Positives = 56/90 (62%), Gaps = 14/90 (15%)
Frame = +2
Query: 59 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK-------------IVEMS 196
M D E+ HFE+ D+GAS T+P Q +RKNG +++K RPCK +VE+S
Sbjct: 1323 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKWSGNHASLLVDTKVVEVS 1382
Query: 197 TSKTGKHGHAKVHLVGIDISMVKSMKISVP 286
TSKTGKHGHAK H V IDI K ++ VP
Sbjct: 1383 TSKTGKHGHAKCHFVAIDIFNGKKLEDIVP 1412
>12_02_0477 +
19503678-19503803,19504381-19504422,19504631-19504684,
19504946-19505068,19505154-19505210,19505299-19505373,
19505925-19506026
Length = 192
Score = 98.3 bits (234), Expect = 5e-21
Identities = 43/86 (50%), Positives = 65/86 (75%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIP-DGDLGTQLR 438
KK EDI PS+HN DVPHV R +YQL DIS+DG+++L+ +NG+ ++DL++P D +L +Q++
Sbjct: 102 KKLEDIVPSSHNCDVPHVNRTEYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLSQIK 161
Query: 439 TDFDSGKELLCTVLKSCGEECVIASK 516
F GK+L+ TV+ + GEE + A K
Sbjct: 162 DGFGEGKDLVVTVMSAMGEEQICALK 187
Score = 55.2 bits (127), Expect(2) = 2e-17
Identities = 22/42 (52%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +2
Query: 59 MGDIEDTHFET-GDSGASATFPMQCSALRKNGFVMLKGRPCK 181
M D E+ HFE+ D+GAS T+P Q +RKNG++++K RPCK
Sbjct: 1 MSDSEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCK 42
Score = 52.0 bits (119), Expect(2) = 2e-17
Identities = 23/36 (63%), Positives = 27/36 (75%)
Frame = +2
Query: 179 KIVEMSTSKTGKHGHAKVHLVGIDISMVKSMKISVP 286
K+VE+STSKTGKHGHAK H V IDI K ++ VP
Sbjct: 74 KVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVP 109
>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
Length = 175
Score = 54.4 bits (125), Expect = 9e-08
Identities = 25/63 (39%), Positives = 45/63 (71%), Gaps = 2/63 (3%)
Frame = +1
Query: 310 HVKREDYQLTDISDDG-YLTLMADNGDLREDLKIPDGD-LGTQLRTDFDSGKELLCTVLK 483
H+ R +YQL DIS+DG +++L+ ++G+ ++DL +P D L Q++T F GK+++ TV+
Sbjct: 46 HMNRTNYQLIDISEDGLFVSLLTESGNTKDDLGLPTYDNLLGQIKTGFGEGKDVVVTVMS 105
Query: 484 SCG 492
+ G
Sbjct: 106 AMG 108
>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
Length = 268
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +3
Query: 99 PGPQPPSPCNVRPCVKTVSLC*RVVHARLLKCPHPKPE 212
P PQPP PC PC K C + C PKP+
Sbjct: 81 PLPQPPPPCKPPPCEKPPEDC-KPKPCHCCSCEKPKPK 117
>07_03_0434 +
18175560-18175695,18176068-18176177,18176553-18176616,
18176839-18176915,18177152-18177223,18178337-18178456
Length = 192
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 301 DVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGD 420
D P+ RE +++ ++ D Y+T D+G L ED+K+ G+
Sbjct: 38 DFPNFIREGFEVKVVTSDNYIT--RDSGLLYEDIKVGTGN 75
>01_06_1303 -
36132588-36132710,36133879-36134103,36134318-36134713,
36135352-36135547,36135591-36135740,36135818-36135924,
36135987-36136094,36136354-36136435,36136436-36136536,
36136778-36136996,36137455-36137583,36137665-36137742,
36137816-36137929,36138071-36138230,36139224-36139441
Length = 801
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +2
Query: 20 HIIPDRC*IQNTTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMS 196
H+ +Q ++ D E H T +ATFPM L N + +GR CK V +S
Sbjct: 423 HVADPTSLVQPRSIIDREAMHRGTSIFLPTATFPMFPERLAMNAMSLQQGRGCKSVTVS 481
>04_01_0576 +
7466032-7466802,7468382-7468444,7469043-7469122,
7469505-7469622,7470035-7470067,7470400-7470474,
7470887-7471043,7471142-7471230,7472041-7472294,
7472977-7473148,7473250-7473333,7473626-7473730,
7474055-7474363,7474622-7474756,7476236-7476317,
7476423-7476502,7476622-7476783,7477071-7477138,
7478422-7478502,7478634-7478760,7478816-7478879,
7480808-7480854,7481042-7481335
Length = 1149
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 60 WVTSKTHTLRPETPGPQPPSPCNV 131
W+T T P+ P P PP PC+V
Sbjct: 52 WLTWPPPTPLPDAPPPPPPHPCDV 75
>08_02_0861 - 21974524-21975224,21975307-21975467,21975563-21976695
Length = 664
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 409 PDGDLGTQLRTDFDSGKELLCTVLKSCGE 495
PDGDL ++R +SGKEL L G+
Sbjct: 206 PDGDLKDKMRDAMESGKELTSNALALIGK 234
>05_01_0297 - 2314687-2316021
Length = 444
Score = 28.7 bits (61), Expect = 4.9
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +1
Query: 334 LTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 492
+ D + +G L + AD D+R + DGD G +LR F S +LL V S G
Sbjct: 91 VVDCTGEGVLFVEAD-ADVRLEELEEDGDGGGELRPPFPSMDQLLLDVEGSGG 142
>08_02_0610 + 19307537-19308011,19308187-19310846
Length = 1044
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -3
Query: 82 VCVFDVTHCCVLNLTTVRNDM 20
VC FD+ CC L T+ NDM
Sbjct: 836 VCHFDLRTCCALPPATLENDM 856
>03_02_0360 - 7796799-7796816,7797477-7797587,7797760-7798068
Length = 145
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 90 PETPGPQPPSPCNVRP-CVKTVSLC*RVVHARLLKCPHP 203
PE P PP C + P C C ++ +LL+ HP
Sbjct: 8 PENESPPPPPHCWIYPECTLVTRSCCLLLRLKLLRHGHP 46
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +1
Query: 373 ADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEEC 501
A GD DL IPD + TQ+ T+ S C V S G C
Sbjct: 248 ASTGDRSVDLPIPDNETNTQI-TEMRSNGAEKCDVQLSGGTLC 289
>08_02_0733 +
20546072-20546325,20546924-20547017,20547441-20547624,
20547722-20547831,20548328-20548423,20548525-20548679,
20548743-20548986,20549159-20549314,20549600-20549829,
20552213-20552316,20552420-20552505,20552776-20553066,
20553383-20553475,20553640-20553735,20553838-20553939,
20554196-20554266,20554784-20555035,20555786-20556529,
20557038-20557119,20557192-20557347,20557446-20557655,
20558282-20558665
Length = 1397
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 92 GDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 250
G SG+ + + SA+ ++ F + + K+VEM ++ K + KVH G D
Sbjct: 543 GTSGSKCS--LWLSAIVRHMFTLYDFKLAKLVEMESALEDKSKNVKVHAEGYD 593
>05_01_0479 -
3920992-3921513,3921643-3921756,3921905-3922482,
3922709-3923067,3923132-3923205
Length = 548
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -2
Query: 605 IYVRVVD-CKKLKVC*PYKC*VGLFVESCVCFDAMTHSSPQDF 480
+Y + VD C C P+ G+ C C ++ + SPQD+
Sbjct: 165 VYAQPVDPCTAFGTCGPFTICNGISRPFCDCMESFSWKSPQDW 207
>05_01_0478 - 3910575-3912989
Length = 804
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -2
Query: 605 IYVRVVD-CKKLKVC*PYKC*VGLFVESCVCFDAMTHSSPQDF 480
+Y + V C C P+ GL C C ++ + SPQD+
Sbjct: 303 VYTQPVSPCTAYATCGPFTICKGLANPVCSCMESFSQKSPQDW 345
>04_01_0031 + 381389-381841
Length = 150
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Frame = +3
Query: 48 KTQQWVTSKTHTLR-----PETPGPQPPSPCNVRP 137
+ ++W T +T TLR P+T P PP P P
Sbjct: 69 RERRWCTPRTSTLRREWALPDTASPPPPLPLEPAP 103
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 27.9 bits (59), Expect = 8.6
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +1
Query: 274 DICPSTHNMD---VPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD 444
D CP T D V++ + TD +M G + GDLG+ RTD
Sbjct: 233 DQCPGTSATDSTGATCVQQAEKVSTDSDQVAKAAMMTAEGAMNFMRSTISGDLGSFPRTD 292
Query: 445 FDSGKE 462
SGKE
Sbjct: 293 AASGKE 298
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,170,567
Number of Sequences: 37544
Number of extensions: 474112
Number of successful extensions: 1659
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -