Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS20083
(676 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 135 3e-32
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 133 1e-31
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 111 4e-25
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 82 3e-16
10_01_0316 + 3479574-3482679,3482766-3483127 29 3.4
10_01_0318 + 3493913-3496976,3497064-3497392 28 5.9
07_01_0375 - 2790287-2790675,2790843-2793783 28 7.8
05_05_0377 - 24498664-24500215,24500306-24500643 28 7.8
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 135 bits (327), Expect = 3e-32
Identities = 57/84 (67%), Positives = 71/84 (84%)
Frame = +1
Query: 256 DGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKC 435
DGDEMTR+ W IK++LIFP++++D YFDLGLP+RD TDD+VT+++A A LK+NV IKC
Sbjct: 16 DGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAEATLKYNVAIKC 75
Query: 436 ATITPDEQRVEEFKLKKMWLSPNG 507
ATITPDE RV+EF LK MW SPNG
Sbjct: 76 ATITPDEARVKEFSLKSMWKSPNG 99
Score = 96.7 bits (230), Expect = 1e-20
Identities = 41/59 (69%), Positives = 49/59 (83%)
Frame = +3
Query: 498 PERKIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVE 674
P IRNIL GTVFREPI+C++IPR+VPGWTKPI IGRHA GDQY+A D V+ PGK++
Sbjct: 97 PNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGRHAFGDQYRATDAVIKGPGKLK 155
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 133 bits (322), Expect = 1e-31
Identities = 57/84 (67%), Positives = 71/84 (84%)
Frame = +1
Query: 256 DGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKC 435
DGDEMTRI W IK++LIFP++ +D Y+DLG+ HRDATDD+VT+++A A LK+NV IKC
Sbjct: 16 DGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAAEATLKYNVAIKC 75
Query: 436 ATITPDEQRVEEFKLKKMWLSPNG 507
ATITPDE RV+EF LK+MW SPNG
Sbjct: 76 ATITPDEARVKEFNLKQMWKSPNG 99
Score = 94.7 bits (225), Expect = 6e-20
Identities = 39/59 (66%), Positives = 49/59 (83%)
Frame = +3
Query: 498 PERKIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVE 674
P IRNI+ GTVFREPI+C+++PR+VPGWTKPI IGRHA GDQY+A D V+ PGK++
Sbjct: 97 PNGTIRNIINGTVFREPIICKNVPRLVPGWTKPICIGRHAFGDQYRATDAVLKGPGKLK 155
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 111 bits (268), Expect = 4e-25
Identities = 57/104 (54%), Positives = 70/104 (67%), Gaps = 18/104 (17%)
Frame = +1
Query: 250 REDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGI 429
R GDEMTR++W IK++LIFP++ +D Y+DLGLP+RDAT D+VTI+SA A LK+NV I
Sbjct: 39 RNSGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNVAI 98
Query: 430 KCATITP------------------DEQRVEEFKLKKMWLSPNG 507
KCATITP DE RV+EF L MW SPNG
Sbjct: 99 KCATITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNG 142
Score = 94.3 bits (224), Expect = 8e-20
Identities = 40/59 (67%), Positives = 48/59 (81%)
Frame = +3
Query: 498 PERKIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVE 674
P IRNIL GTVFREPI+C++IPR+VPGW KPI IGRHA GDQY+A D V+ PGK++
Sbjct: 140 PNGTIRNILNGTVFREPIICKNIPRLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLK 198
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 82.2 bits (194), Expect = 3e-16
Identities = 41/68 (60%), Positives = 50/68 (73%)
Frame = +1
Query: 304 LIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLK 483
LIFPY+++D YFDLGL +RDATDD+VT++SA A L T+T DE RV+EFKLK
Sbjct: 101 LIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFKLK 159
Query: 484 KMWLSPNG 507
MW SPNG
Sbjct: 160 SMWRSPNG 167
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/50 (44%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
Frame = +3
Query: 456 TKSRRVQVEENVAKPERKIRNILGGTVFREPILCQSIPRV--VPGWTKPI 599
T+ + +++ P IRNIL GTVFREPILC+++PR+ VP +P+
Sbjct: 151 TRVKEFKLKSMWRSPNGTIRNILNGTVFREPILCKNVPRILSVPDGAEPV 200
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 510 IRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 641
+RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 843 MRNLDSTEELPEDLTYEDILRATDNWSEKYVIGRGRHGTVYRTE 886
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 510 IRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 641
+RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 829 VRNMDSTEELPEELTYEDILRGTDNWSEKYVIGRGRHGTVYRTE 872
>07_01_0375 - 2790287-2790675,2790843-2793783
Length = 1109
Score = 27.9 bits (59), Expect = 7.8
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = +3
Query: 462 SRRVQVEENVAKPERKIRNILGGTVF-REPILCQSIPRVVPGWTKPIVIGRHAHGDQYKA 638
S + ++ + V+ ERK G F +E I Q + +V +++ VIGR A G YKA
Sbjct: 767 SLKSKIPDLVSNEERKT-GFSGPHYFLKERITFQELMKVTDSFSESAVIGRGACGTVYKA 825
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 27.9 bits (59), Expect = 7.8
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 503 FGLSHIFFNLNSSTLCSSGVIVAHLMPTLCF 411
+ S +F LN + +C + L+PT+C+
Sbjct: 343 YASSECYFGLNLNPMCKPSEVAYTLIPTMCY 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,048,905
Number of Sequences: 37544
Number of extensions: 363172
Number of successful extensions: 811
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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